PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_12546_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | bHLH | ||||||||
Protein Properties | Length: 257aa MW: 28233.6 Da PI: 4.5816 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.7 | 1.4e-10 | 180 | 220 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR+riN+++ L+ l+P+ +K++ +++Le+Av+Y+k Lq cra_locus_12546_iso_1_len_769_ver_3 180 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 220 9******************97.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.57E-14 | 169 | 236 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.224 | 170 | 219 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-12 | 175 | 230 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.3E-11 | 176 | 225 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.30E-11 | 179 | 224 | No hit | No description |
Pfam | PF00010 | 6.9E-8 | 180 | 220 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0016049 | Biological Process | cell growth | ||||
GO:0048766 | Biological Process | root hair initiation | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
XSTSSSSANL WHSQENECPN YSSEETSAAA EIMYSFSSPY NNHNYVYPMS SAGSAWTEFL 60 NQDLSNDSMD QSAGEAVSEG TIRDHEIIIA VPAAAHETSV EDSKEDSXII RDIKEKKPKK 120 NHQKINDESI SCPSEEDDSS NGGGSGSGSA MVPLPPALNL NGKTRANRGS ATDPQSLYAR 180 KRRERINERL RILQNLVPNG TKVDISTMLE EAVQYVKFLQ LQIKLLSSDE LWMYAPIAYN 240 GMDIGLDLKI DATPKSS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012836777.1 | 2e-65 | PREDICTED: transcription factor bHLH54-like | ||||
Swissprot | Q7XHI9 | 1e-61 | BH084_ARATH; Transcription factor bHLH84 | ||||
TrEMBL | A0A022RB65 | 5e-64 | A0A022RB65_ERYGU; Uncharacterized protein | ||||
STRING | Migut.B00443.1.p | 6e-65 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA639 | 22 | 101 |