PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | cra_locus_12529_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
|
||||||||
Family | AP2 | ||||||||
Protein Properties | Length: 181aa MW: 19809.4 Da PI: 4.2898 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 30.1 | 1.2e-09 | 153 | 181 | 1 | 34 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslg 34 s+y+GV++++++grW+++I+d + k+++lg cra_locus_12529_iso_1_len_987_ver_3 153 SQYRGVTFYRRTGRWESHIWD------CgKQVYLG 181 78*******************......55***998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 8.9 | 154 | 181 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 181 aa Download sequence Send to blast |
MLDLNLNVMI DEELEKCVEG LGDYESATSN SSVVNADVAA EASSNATTAD DDTCSPAAAA 60 AADICTFNFD ILKVNAAGGE EAEGEEDNRL VGGTQSEFVT RDLFPSNRAV DGTESNRGPN 120 DGNNWVDLSF GQQQRQQQQQ VKKSRRGPRS RSSQYRGVTF YRRTGRWESH IWDCGKQVYL 180 G |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027087014.1 | 4e-46 | ethylene-responsive transcription factor RAP2-7-like isoform X2 | ||||
TrEMBL | A0A068UKW4 | 5e-44 | A0A068UKW4_COFCA; Uncharacterized protein | ||||
STRING | XP_009784819.1 | 2e-38 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA591 | 24 | 116 |