PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_12465_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

MYB_related

Protein Properties

Length: 691aa MW: 76730.3 Da PI: 4.449

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_12465_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	37.8	4.4e-12	539	580	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rWT+++ el+++avkq+G++ + I + ++ gRt+ q+k+++ k cra_locus_12465_iso_1_len_2228_ver_3 539 RWTKQDTELFYEAVKQFGTD-LSMIQQLFP-GRTRRQVKLKYKK 580 8*****************.*****.*********87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF15963	5.4E-27	530	611	No hit	No description
PROSITE profile	PS51293	9.482	535	583	IPR017884	SANT domain
SMART	SM00717	1.2E-8	536	584	IPR001005	SANT/Myb domain
CDD	cd00167	4.47E-8	539	580	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.1E-6	539	580	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.23E-11	539	586	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 691 aa Download sequence Send to blast
XGXKIHLDWV LADGQGSSGI VNAPSVDAGT TENVNSTVGL DPGVSIFIPD SNEDWGSCFE 60 KSVGENGDIF IGLESFGDFL PDSSAVIDNS VPSSEAPAVD VPGSSNTEEG RIDPTVPAVD 120 DSACFSDVPG ISSQPETSAA EDPLTGPETI ISASHGDDRD LDKEDLESYP CLETLDISEL 180 ANRSGRRIGK FQPKPKSQLE RHQTNISDLD LVHPVPTVSR QQDSQLVPPE VNFVDHGLVT 240 ASTQNDILEF SSVGLSGPAA EIASEAEESN PIEPSHAGAG IPGEHLESVP GKLTSRRAKT 300 GKSRKTVSDH LSPEHPTSNQ TETAGRVLRK RQNNNNVYQL RDESEDEVVA DGDLPSSSPS 360 VFAAKGNKND DQEYQPENES LTKKVKKSKK TPGDKEKPVR KQKKDNETSD QTAKAAPKKF 420 LHSTRRRRVN KTLLETPEDE IDFQKVPLRD LILLAEHKER MAKKEATPSR APPSNHSAGD 480 FVEPDNEDRG GDDFQQYYDE PFASEQGGEA NDKESSPRVQ ENSEYFNYQT YMDKTPIARW 540 TKQDTELFYE AVKQFGTDLS MIQQLFPGRT RRQVKLKYKK EERQHPLRLR DALTNRARDH 600 SHFELVIDRL RQLAAEEKQN SDKAESVDLT AEEEAEEEAP ETSDKEGKSE QMDEEMMEKT 660 EPDYNKQVQS PVKTYDSEDD LLLWNQYKSE E

Sequence ? help Back to Top

Protein Sequence Length: 691 aa Download sequence Send to blast

XGXKIHLDWV LADGQGSSGI VNAPSVDAGT TENVNSTVGL DPGVSIFIPD SNEDWGSCFE  60
KSVGENGDIF IGLESFGDFL PDSSAVIDNS VPSSEAPAVD VPGSSNTEEG RIDPTVPAVD  120
DSACFSDVPG ISSQPETSAA EDPLTGPETI ISASHGDDRD LDKEDLESYP CLETLDISEL  180
ANRSGRRIGK FQPKPKSQLE RHQTNISDLD LVHPVPTVSR QQDSQLVPPE VNFVDHGLVT  240
ASTQNDILEF SSVGLSGPAA EIASEAEESN PIEPSHAGAG IPGEHLESVP GKLTSRRAKT  300
GKSRKTVSDH LSPEHPTSNQ TETAGRVLRK RQNNNNVYQL RDESEDEVVA DGDLPSSSPS  360
VFAAKGNKND DQEYQPENES LTKKVKKSKK TPGDKEKPVR KQKKDNETSD QTAKAAPKKF  420
LHSTRRRRVN KTLLETPEDE IDFQKVPLRD LILLAEHKER MAKKEATPSR APPSNHSAGD  480
FVEPDNEDRG GDDFQQYYDE PFASEQGGEA NDKESSPRVQ ENSEYFNYQT YMDKTPIARW  540
TKQDTELFYE AVKQFGTDLS MIQQLFPGRT RRQVKLKYKK EERQHPLRLR DALTNRARDH  600
SHFELVIDRL RQLAAEEKQN SDKAESVDLT AEEEAEEEAP ETSDKEGKSE QMDEEMMEKT  660
EPDYNKQVQS PVKTYDSEDD LLLWNQYKSE E

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027087508.1	0.0	transcription factor TFIIIB component B'' isoform X2
TrEMBL	A0A068VEV1	0.0	A0A068VEV1_COFCA; Uncharacterized protein