PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_12447_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | ERF | ||||||||
Protein Properties | Length: 260aa MW: 28954.4 Da PI: 10.5653 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66.3 | 5.9e-21 | 138 | 187 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+W+AeIrdp+ + +r++lg+f+tae+Aa+a+++a+ +++g cra_locus_12447_iso_1_len_881_ver_3 138 NYRGVRQRP-WGKWAAEIRDPR----KaARVWLGTFDTAEDAARAYDRAAIEFRG 187 59*******.**********94....36************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 25.053 | 138 | 195 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.2E-14 | 138 | 187 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.7E-40 | 138 | 201 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.7E-32 | 138 | 195 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.17E-23 | 138 | 196 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.1E-12 | 139 | 150 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.24E-22 | 139 | 195 | No hit | No description |
PRINTS | PR00367 | 3.1E-12 | 161 | 177 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
XRSTKRFKQE QGNSFPPPPS GSSSPSPPPP PKPRLTREQE INVMVAALKN VITGGATAAA 60 MNSTTSQHFR LFPPFESATN SSSSSIDQPL NLPPPVPDAG EICQFCKIKG CLGCNFFGIG 120 PAIDDKKKKN VVKRKKKNYR GVRQRPWGKW AAEIRDPRKA ARVWLGTFDT AEDAARAYDR 180 AAIEFRGPRA KLNFAFSDYT SLDEEKQSSS SSPAMXXXXX XXXXXXXXXX XXXXXXXXXX 240 XXXXXXXXXX XXXXXXXXXX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-24 | 135 | 194 | 2 | 62 | ATERF1 |
3gcc_A | 2e-24 | 135 | 194 | 2 | 62 | ATERF1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00469 | DAP | Transfer from AT4G34410 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016502425.1 | 1e-64 | PREDICTED: ethylene-responsive transcription factor ERF109-like | ||||
Swissprot | Q9SZ06 | 2e-33 | EF109_ARATH; Ethylene-responsive transcription factor ERF109 | ||||
TrEMBL | A0A1S4CMZ7 | 3e-63 | A0A1S4CMZ7_TOBAC; ethylene-responsive transcription factor ERF109-like | ||||
STRING | XP_009609381.1 | 9e-64 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Publications ? help Back to Top | |||
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