PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | cra_locus_12433_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 207aa MW: 23857.7 Da PI: 6.8148 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.9 | 4e-19 | 54 | 106 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++++eq++ Le F +++++ e++ +LA++lgL+ rqV vWFqNrRa+++ cra_locus_12433_iso_1_len_704_ver_3 54 KRKLSQEQVNLLELNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWR 106 4589************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 115.1 | 4.2e-37 | 53 | 144 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalke 75 +kr+ls+eqv+lLE +F +e+kLe+erK +la+eLgl+prqvavWFqnrRAR+++k+lE++y++Lk+++++ + cra_locus_12433_iso_1_len_704_ver_3 53 RKRKLSQEQVNLLELNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWRSKKLEEEYSKLKSEHENNVV 126 8************************************************************************* PP HD-ZIP_I/II 76 enerLekeveeLreelke 93 e++rLe+ev +L+e+l e cra_locus_12433_iso_1_len_704_ver_3 127 EKCRLETEVLKLKEQLIE 144 **************9965 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.552 | 48 | 108 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.8E-16 | 51 | 112 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.56E-17 | 53 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 6.15E-15 | 53 | 109 | No hit | No description |
Pfam | PF00046 | 3.0E-16 | 54 | 106 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 7.9E-20 | 55 | 115 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.3E-5 | 79 | 88 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 83 | 106 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.3E-5 | 88 | 104 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 207 aa Download sequence Send to blast |
MSSHQEVDDQ MVLISQYYPG IYTQLMPAEQ GAAKPRRRRK KNKGEGSGNG VMRKRKLSQE 60 QVNLLELNFG NEHKLESERK DRLASELGLD PRQVAVWFQN RRARWRSKKL EEEYSKLKSE 120 HENNVVEKCR LETEVLKLKE QLIEAEKEIQ RLLERGGSDG LSSNTSPSSS FSMEPPFLGG 180 EFGMEGLEKV FYVPESSYIP EMEWAGX |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 36 | 54 | RRRKKNKGEGSGNGVMRKR |
2 | 38 | 55 | RKKNKGEGSGNGVMRKRK |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00473 | DAP | Transfer from AT4G36740 | Download |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015065260.1 | 2e-94 | homeobox-leucine zipper protein ATHB-40 | ||||
Swissprot | O23208 | 1e-74 | ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40 | ||||
TrEMBL | A0A068U2N9 | 1e-93 | A0A068U2N9_COFCA; Uncharacterized protein | ||||
STRING | Solyc02g085630.2.1 | 3e-93 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1289 | 24 | 80 |
Publications ? help Back to Top | |||
---|---|---|---|
|