PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_12315_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family bHLH
Protein Properties Length: 509aa    MW: 55856 Da    PI: 7.1547
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_12315_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.86.1e-16328374455
                                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                            hn  ErrRRdriN+++  L+ellP++      K +Ka++L +A+eY+ksLq
  cra_locus_12315_iso_1_len_2437_ver_3 328 VHNLSERRRRDRINEKMRALQELLPHS-----NKSDKASMLDEAIEYMKSLQ 374
                                           6*************************7.....59*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.09E-19322386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.815324373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.07E-17327378No hitNo description
PfamPF000102.1E-13328374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-19328383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-17330379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009585Biological Processred, far-red light phototransduction
GO:0009693Biological Processethylene biosynthetic process
GO:0009704Biological Processde-etiolation
GO:0010161Biological Processred light signaling pathway
GO:0010244Biological Processresponse to low fluence blue light stimulus by blue low-fluence system
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0010928Biological Processregulation of auxin mediated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
XAMNPCFPDW NIEAELPVLH QKKPFGLEHE LVELLWENGQ VVLHSQTHRK SGPAGVPDHP  60
FDSSTRQLNN NNNSNNKQAT TSCGNPTATL IQDNDTVSWI HCQVDDPFDK EFSSNFLPVI  120
PLPTPQLEDP PHKQQIQHCR THPSTNFGPN PLPAPRFQSD SNNVRGGVSK CPNVLLKADL  180
GSSNSGPRPS SHMIIGEVRE YSMRTVGSSH CGSNQVAMDA DTSRASSCGI GNNDLSAAAV  240
VKDYEGKLGS QNYERGERET HELANTSSSG GSGTSFGRTC TATDSLKRKS RDAEDSECQS  300
EAAVLESEAR KKPASKSGIA RKSRAAEVHN LSERRRRDRI NEKMRALQEL LPHSNKSDKA  360
SMLDEAIEYM KSLQLQLQMM WMRSGMAPLM FPGVQHYMSR LGMGIGPPTL PPVPNPMHLS  420
RLPLVDQTMT VASAPNQAAL CPTSVINPIN YQNQLQNSNF SEQYATYMGF HHPMQTSSQP  480
INVFGFNSNM TQQNHNFAPP SNTNGSSAG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1332337ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00606ChIP-seqTransfer from AT2G43010Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027061311.11e-172transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X1
RefseqXP_027061312.11e-172transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X1
RefseqXP_027061313.11e-172transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X1
TrEMBLA0A0N7HUP60.0A0A0N7HUP6_CATRO; Phytochrome interacting factor 5-like protein
STRINGXP_006485007.11e-167(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA104652226