PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_1223_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family bZIP
Protein Properties Length: 197aa    MW: 22786.3 Da    PI: 6.716
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_1223_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_143.47.4e-1482133556
                                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 
                                         +++rr+++NRe+ArrsR RK+  ++eL   v  L +eN+ L+++l++ ++  
  cra_locus_1223_iso_1_len_858_ver_3  82 RKQRRMISNRESARRSRMRKQRHLDELWSQVLRLRTENTNLIDKLNHVTECH 133
                                         79********************************************998755 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.0E-1678142IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.6880131IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.04E-1382131No hitNo description
Gene3DG3DSA:1.20.5.1701.4E-1182154No hitNo description
PfamPF001701.1E-1182139IPR004827Basic-leucine zipper domain
CDDcd147029.17E-1883134No hitNo description
PROSITE patternPS00036085100IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MIPSDATGNQ FFVPENHLPF PSNINLMQNS FPALHFSRLV NNSPNYQQSS SIHEFYPQSS  60
CLSSNSTSDE AEDQQLRIID ERKQRRMISN RESARRSRMR KQRHLDELWS QVLRLRTENT  120
NLIDKLNHVT ECHDRVLEEN TRLKEEASDL RRVLTDIQLG SPYNALRDLD EVPCNTAHLR  180
AESSNQSICT ASANLLH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
194101RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027095835.11e-104basic leucine zipper 43-like
SwissprotQ9FMC21e-37BZP43_ARATH; Basic leucine zipper 43
TrEMBLA0A068TW221e-104A0A068TW22_COFCA; Uncharacterized protein
STRINGcassava4.1_022183m4e-88(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9472492
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]