PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_12222_iso_4

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

bZIP

Protein Properties

Length: 306aa MW: 34284 Da PI: 8.4872

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_12222_iso_4	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.2	1.1e-10	20	61	5	46
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 k rr+++NReAAr+sR+RKka++++Le+ +L++ ++Lk cra_locus_12222_iso_4_len_1781_ver_3 20 KTLRRLAQNREAARKSRLRKKAYVQQLENSRIKLTQLEQELK 61 788*************************98888888877776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	8.8E-9	16	94	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.7E-8	16	63	No hit	No description
Pfam	PF07716	2.7E-7	18	62	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.45	18	62	IPR004827	Basic-leucine zipper domain
CDD	cd14708	3.41E-21	20	70	No hit	No description
SuperFamily	SSF57959	8.13E-7	20	63	No hit	No description
PROSITE pattern	PS00036	0	23	38	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.3E-30	105	178	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009909	Biological Process	regulation of flower development
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MGASVVDSVE QSGGRTGDQK TLRRLAQNRE AARKSRLRKK AYVQQLENSR IKLTQLEQEL 60 KRARQQGMFI PAGHSGDQSH FTGENGGLAF DLDYARWLDE HQRLINDLRS AVNSHLGDNE 120 LRLLVDGVMS HYDEIFRLKS IGTKSDVFHM LSGMWKSPAE RCFMWLGGFR SSEILKILGD 180 HLEPLTDQQL IGICNLQQSS QQAEDALSQG MEALQQSLVD TLSSNCLGSA GSGNVADYMG 240 QMAIAMGKLA TLENFLHQAD LLRQQTLQQM HRILTTRQAA RALLVLSDYM SRLRALSSLW 300 LARPKD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in the determination of floral organ number. Acts to determine floral organ patterning by establishing floral organ primordia in specific numbers and positions. Plays a role in regulating stem cell fate by directly controlling AG expression. Binds to the 5'-AAGAAT-3' cis-acting element found in AG promoter. Might represent a target for a post-translational modification by GRXC7/ROXY1. {ECO:0000269\|PubMed:19395638, ECO:0000269\|PubMed:19395639, ECO:0000269\|PubMed:9990857}.
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010647869.1	0.0	PREDICTED: transcription factor TGA2.3
Refseq	XP_019076430.1	0.0	PREDICTED: transcription factor TGA2.3
Swissprot	Q5Z6N9	1e-162	TGAL3_ORYSJ; Transcription factor TGAL3
Swissprot	Q9SX27	1e-162	PAN_ARATH; Transcription factor PERIANTHIA
TrEMBL	D7T978	0.0	D7T978_VITVI; Uncharacterized protein
STRING	VIT_01s0011g03230.t01	0.0	(Vitis vinifera)

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Maier AT,Stehling-Sun S,Offenburger SL,Lohmann JU The bZIP Transcription Factor PERIANTHIA: A Multifunctional Hub for Meristem Control. Front Plant Sci, 2011. 2: p. 79 [PMID:22645551] Chandler JW,Werr W Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation. J. Exp. Bot., 2014. 65(12): p. 3097-110 [PMID:24744428] Wynn AN,Seaman AA,Jones AL,Franks RG Novel functional roles for PERIANTHIA and SEUSS during floral organ identity specification, floral meristem termination, and gynoecial development. Front Plant Sci, 2014. 5: p. 130 [PMID:24778638] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] de Luis Balaguer MA, et al. Predicting gene regulatory networks by combining spatial and temporal gene expression data in Arabidopsis root stem cells. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(36): p. E7632-E7640 [PMID:28827319]