PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_121939_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | bHLH | ||||||||
Protein Properties | Length: 143aa MW: 16524.7 Da PI: 10.1227 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.5 | 4.3e-12 | 57 | 110 | 1 | 54 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-.STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskK.lsKaeiLekAveYIksL 54 ++ hn+ Er RR r+N ++ Lr llP + +skK s a+i+ k+ +YI ++ cra_locus_121939_iso_1_len_538_ver_3 57 KKLQHNAKERIRRMRLNASYLALRALLPDiS--RRSKKrWSAAAIVDKVLKYIPEM 110 5778*************************76..466666**************876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 6.28E-13 | 55 | 135 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.493 | 56 | 110 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.7E-9 | 58 | 110 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.1E-11 | 58 | 134 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.95E-5 | 61 | 115 | No hit | No description |
SMART | SM00353 | 2.1E-6 | 62 | 116 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 143 aa Download sequence Send to blast |
MEKNTRDDND ADEEEVVISK MSERQRRVNE LLAEKESSSA AMELGSSSAA HNNNNNKKLQ 60 HNAKERIRRM RLNASYLALR ALLPDISRRS KKRWSAAAIV DKVLKYIPEM ENEIEKLKLS 120 KDNAKKKQQE EQLQMSEKQS LTV |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011087740.1 | 1e-29 | transcription factor bHLH100 | ||||
Swissprot | F4I8F9 | 3e-15 | BH160_ARATH; Transcription factor bHLH160 | ||||
TrEMBL | A0A2R6RGL8 | 8e-27 | A0A2R6RGL8_ACTCH; Transcription factor bHLH100 like | ||||
STRING | XP_010243481.1 | 1e-24 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA15451 | 6 | 7 |
Publications ? help Back to Top | |||
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