PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_12175_iso_5

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

bHLH

Protein Properties

Length: 363aa MW: 40612.9 Da PI: 6.6743

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_12175_iso_5	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.6	5.4e-09	191	238	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq cra_locus_12175_iso_5_len_1378_ver_3 191 SHSLAERARREKISKKMKCLQDLVPGC----NKVTGKAGMLDEIINYVQSLQ 238 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	9.16E-17	185	257	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.13E-8	185	242	No hit	No description
Gene3D	G3DSA:4.10.280.10	9.2E-18	187	256	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.237	187	237	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.3E-6	191	238	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.2E-10	193	243	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009299	Biological Process	mRNA transcription
GO:0009735	Biological Process	response to cytokinin
GO:0009826	Biological Process	unidimensional cell growth
GO:0043425	Molecular Function	bHLH transcription factor binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence Send to blast
MLRCVQSSSS LENFSVAGNN DSSCITMSVL ERQRAILQRM YQDQQHQSSL DINGMSLNSY 60 QNLINSMNPH HSADENSPNF GFAGSEITSN ASLDLDQQHQ RSFSTVSATN SSRDHQLGTS 120 TKKRKAEFGE EEECKEKGFE EAGEVQSGLT VKSEKENSRK TSKENSKASS ELVQKTDYIH 180 VRARRGQATD SHSLAERARR EKISKKMKCL QDLVPGCNKV TGKAGMLDEI INYVQSLQKQ 240 VEFLSMKLAA LNPRLDFNTE HFVAKEFPAY MASFSPLELM QSAYYQFNNQ GPHQQGSGSC 300 SVDTSTTPSP TRMVPQRTGT TTPSISLPEA YLDSFSSLQQ VQQIPAWDSD WQNLYSVNYH 360 KDN

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence Send to blast

MLRCVQSSSS LENFSVAGNN DSSCITMSVL ERQRAILQRM YQDQQHQSSL DINGMSLNSY  60
QNLINSMNPH HSADENSPNF GFAGSEITSN ASLDLDQQHQ RSFSTVSATN SSRDHQLGTS  120
TKKRKAEFGE EEECKEKGFE EAGEVQSGLT VKSEKENSRK TSKENSKASS ELVQKTDYIH  180
VRARRGQATD SHSLAERARR EKISKKMKCL QDLVPGCNKV TGKAGMLDEI INYVQSLQKQ  240
VEFLSMKLAA LNPRLDFNTE HFVAKEFPAY MASFSPLELM QSAYYQFNNQ GPHQQGSGSC  300
SVDTSTTPSP TRMVPQRTGT TTPSISLPEA YLDSFSSLQQ VQQIPAWDSD WQNLYSVNYH  360
KDN

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00106	PBM	Transfer from AT2G18300	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027179268.1	1e-143	transcription factor HBI1-like isoform X1
Refseq	XP_027179286.1	1e-143	transcription factor HBI1-like isoform X1
TrEMBL	A0A068U318	1e-122	A0A068U318_COFCA; Uncharacterized protein
STRING	XP_009803326.1	3e-91	(Nicotiana sylvestris)