PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_12175_iso_3
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family bHLH
Protein Properties Length: 395aa    MW: 44294.6 Da    PI: 6.5859
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_12175_iso_3genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.71.3e-052302701155
                                           HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                   HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                            RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  cra_locus_12175_iso_3_len_1473_ver_3 230 ARREKISKKMKCLQDLVPGC----NKVTGKAGMLDEIINYVQSLQ 270
                                           6******************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.963219269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.9E-5225275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-12230289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.10E-5231274No hitNo description
Gene3DG3DSA:4.10.280.102.1E-14232288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009299Biological ProcessmRNA transcription
GO:0009735Biological Processresponse to cytokinin
GO:0009826Biological Processunidimensional cell growth
GO:0043425Molecular FunctionbHLH transcription factor binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MLRCVQSSSS LENFSVAGNN DSSCITMSVL ERQRAILQRM YQDQQHQSSL DINGMSLNSY  60
QNLINSMNPH HSADENSPNF GFAGSEITSN ASLDLDQQHQ RSFSTVSATN SSRDHQLGTS  120
TKKRKAEFGE EEECKEKGFE EAGEVQSGLT VKSEKENSRK TSKENSKASS ELVQKTDYIH  180
VRARRGQATD SHSLAERVSK QNQXAEFEGN LHNNLXIISV AKFEKIDFQA RREKISKKMK  240
CLQDLVPGCN KVTGKAGMLD EIINYVQSLQ KQVEFLSMKL AALNPRLDFN TEHFVAKEFP  300
AYMASFSPLE LMQSAYYQFN NQGPHQQGSG SCSVDTSTTP SPTRMVPQRT GTTTPSISLP  360
EAYLDSFSSL QQVQQIPAWD SDWQNLYSVN YHKDN
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00106PBMTransfer from AT2G18300Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027179268.11e-136transcription factor HBI1-like isoform X1
RefseqXP_027179286.11e-136transcription factor HBI1-like isoform X1
TrEMBLA0A068U3181e-115A0A068U318_COFCA; Uncharacterized protein
STRINGXP_009803326.12e-84(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40002142