PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_12175_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | bHLH | ||||||||
Protein Properties | Length: 346aa MW: 38437.7 Da PI: 6.997 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.7 | 5e-09 | 191 | 238 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq cra_locus_12175_iso_1_len_1470_ver_3 191 SHSLAERARREKISKKMKCLQDLVPGC----NKVTGKAGMLDEIINYVQSLQ 238 8*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 8.37E-17 | 185 | 257 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.16E-8 | 185 | 242 | No hit | No description |
PROSITE profile | PS50888 | 15.237 | 187 | 237 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.5E-18 | 187 | 256 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.2E-6 | 191 | 238 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.2E-10 | 193 | 243 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009299 | Biological Process | mRNA transcription | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0009826 | Biological Process | unidimensional cell growth | ||||
GO:0043425 | Molecular Function | bHLH transcription factor binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MLRCVQSSSS LENFSVAGNN DSSCITMSVL ERQRAILQRM YQDQQHQSSL DINGMSLNSY 60 QNLINSMNPH HSADENSPNF GFAGSEITSN ASLDLDQQHQ RSFSTVSATN SSRDHQLGTS 120 TKKRKAEFGE EEECKEKGFE EAGEVQSGLT VKSEKENSRK TSKENSKASS ELVQKTDYIH 180 VRARRGQATD SHSLAERARR EKISKKMKCL QDLVPGCNKV TGKAGMLDEI INYVQSLQKQ 240 VEFLSMKLAA LNPRLDFNTE HFVAKEFPAY MASFSPLELM QSAYYQFNNQ GPHQQGSGSC 300 SVDTSTTPSP TRMVPQRTGT TTPSISLPEA YLDSFSSLQV NSTQLI |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00106 | PBM | Transfer from AT2G18300 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027179268.1 | 1e-134 | transcription factor HBI1-like isoform X1 | ||||
Refseq | XP_027179269.1 | 1e-134 | transcription factor HBI1-like isoform X2 | ||||
Refseq | XP_027179286.1 | 1e-134 | transcription factor HBI1-like isoform X1 | ||||
Refseq | XP_027179287.1 | 1e-134 | transcription factor HBI1-like isoform X2 | ||||
TrEMBL | A0A068U318 | 1e-114 | A0A068U318_COFCA; Uncharacterized protein | ||||
STRING | XP_009803326.1 | 5e-86 | (Nicotiana sylvestris) |