PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_12119_iso_6

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Nin-like

Protein Properties

Length: 285aa MW: 31229.2 Da PI: 8.0606

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_12119_iso_6	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	62.4	7.8e-20	39	85	3	49
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRki 49 ++++++++sk+Fslp+ +AA +Lgvc++vLK+ C +G+ RWP+Rki cra_locus_12119_iso_6_len_1039_ver_3 39 SSLTFDQVSKFFSLPLSEAADSLGVCPSVLKKVCYDNGLVRWPYRKI 85 689*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	14.789	24	108	IPR003035	RWP-RK domain
Pfam	PF02042	3.5E-18	40	85	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
SGHYGRGVIT GTMSTLQNPN PNQSPYPNSN PNIAPSSSSS LTFDQVSKFF SLPLSEAADS 60 LGVCPSVLKK VCYDNGLVRW PYRKILAGKS LEEIKEDAAR EKRKHVELPK ALGLVNDDLA 120 SLTVASPLXX XQGNKNVQTG SPLKFHGSTL SKGTPSDLDE FKYGFPTNGL SSVSYRWWGD 180 GSTNGSISTE ENQDKQKSPM KMVDSSDVHS SMNDEDKCEK LTDKNDIDSS GTGFLTALRE 240 KAVKEGAEAL KLGIHRRYDI NKLDQAKKEV LLQIFKSSLP SEWKN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027063502.1	2e-88	protein NLP2
TrEMBL	A0A068UEW3	4e-87	A0A068UEW3_COFCA; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10744	19	21