PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_12119_iso_3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | Nin-like | ||||||||
Protein Properties | Length: 139aa MW: 15148.3 Da PI: 8.6661 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 64.2 | 2.1e-20 | 39 | 85 | 3 | 49 |
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRki 49 ++++++++sk+Fslp+ +AA +Lgvc++vLK+ C +G+ RWP+Rki cra_locus_12119_iso_3_len_1282_ver_3 39 SSLTFDQVSKFFSLPLSEAADSLGVCPSVLKKVCYDNGLVRWPYRKI 85 689*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 14.789 | 24 | 108 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 9.8E-19 | 40 | 85 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 139 aa Download sequence Send to blast |
SGHYGRGVIT GTMSTLQNPN PNQSPYPNSN PNIAPSSSSS LTFDQVSKFF SLPLSEAADS 60 LGVCPSVLKK VCYDNGLVRW PYRKILAGKS LEEIKEDAAR EKRKHVELPK ALGLVNDDLA 120 SLTVASPLKY IDNLYIVLL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022849954.1 | 4e-40 | protein NLP3-like | ||||
TrEMBL | A0A1S3WYW0 | 3e-36 | A0A1S3WYW0_TOBAC; protein NLP2-like | ||||
TrEMBL | A0A1U7VV73 | 3e-36 | A0A1U7VV73_NICSY; protein NLP2 | ||||
STRING | XP_009766294.1 | 5e-37 | (Nicotiana sylvestris) |