PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_12077_iso_3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | bHLH | ||||||||
Protein Properties | Length: 204aa MW: 22955 Da PI: 9.5469 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.3 | 2.1e-11 | 130 | 175 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri ++ +L+el+P+ +k s a++L +Av++Ik Lq cra_locus_12077_iso_3_len_1317_ver_3 130 SIAERERRTRISGKLKKLQELVPNM----DKQTSYADMLDLAVQHIKGLQ 175 689*********************7....688*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.999 | 124 | 174 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.18E-14 | 127 | 189 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.72E-9 | 128 | 179 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 9.8E-14 | 129 | 188 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.9E-12 | 130 | 180 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.4E-9 | 130 | 175 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010119 | Biological Process | regulation of stomatal movement | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
RGHAITRLNS QLSFTRQEPL SQISEENENG LSRETEAKKS STHSYATTSY GVGPWEDANS 60 LMFSVGPSKR AKNINSEIIN DLNSMETQFQ FSMPQTVIEM STMDKLLNIP QDSVPCKIRA 120 KRGFATHPRS IAERERRTRI SGKLKKLQEL VPNMDKQTSY ADMLDLAVQH IKGLQNHVQK 180 LNKELENCTC GCRKPRNCGG EGKS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027117036.1 | 1e-111 | transcription factor bHLH128-like isoform X1 | ||||
Swissprot | Q8H102 | 3e-66 | BH128_ARATH; Transcription factor bHLH128 | ||||
TrEMBL | A0A068UP76 | 1e-109 | A0A068UP76_COFCA; Uncharacterized protein | ||||
STRING | XP_009803686.1 | 8e-97 | (Nicotiana sylvestris) |
Publications ? help Back to Top | |||
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