PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_12077_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family bHLH
Protein Properties Length: 438aa    MW: 48171.4 Da    PI: 9.633
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_12077_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.38.7e-06292317630
                                           HHHHHHHHHHHHHHHHHHHCTSCC.C CS
                                   HLH   6 nerErrRRdriNsafeeLrellPk.a 30 
                                           +++Er RR ri  ++ +L+el+P+ +
  cra_locus_12077_iso_2_len_1779_ver_3 292 SIAERERRTRISGKLKKLQELVPNmD 317
                                           689********************844 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.09E-5289318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.66E-4290322No hitNo description
Gene3DG3DSA:4.10.280.101.0E-4291315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MASGGGGTIN SPALMRYGSA PSSLLSTAVD SVIGSTREFS ALGSTHHHRQ PQNLNMGPNP  60
TPAVRFFPIE TSSFAAESNC KVPNNTSTDP HKKGPDINNN NNNSTIGLQR SYGLKQDAAI  120
SGGGVGMVSF TPLVRHSSSP AGFLNQLAHA STSNDDNGFS ITRGHAITRL NSQLSFTRQE  180
PLSQISEENE NGLSRETEAK KSSTHSYATT SYGVGPWEDA NSLMFSVGPS KRAKNINSEI  240
INDLNSMETQ FQFSMPQTVI EMSTMDKLLN IPQDSVPCKI RAKRGFATHP RSIAERERRT  300
RISGKLKKLQ ELVPNMDKVL IISFLLPPFS STIFLLITLE ISCVNKCCCV VDKHTCSKLA  360
MLTCWIWQFN ISKASRIMFR SSTRNXRTVH VDAESQETVV VKERVDVKDR YTCAVFFIQT  420
FSLLTPRKLR AINSEPPS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027119319.11e-113transcription factor bHLH128-like isoform X1
RefseqXP_027119327.11e-113transcription factor bHLH128-like isoform X1
TrEMBLA0A068UP761e-111A0A068UP76_COFCA; Uncharacterized protein
STRINGPGSC0003DMT4000167934e-90(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA64552328