PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_12034_iso_7 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | bZIP | ||||||||
Protein Properties | Length: 491aa MW: 54306.9 Da PI: 8.7532 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 33 | 1.3e-10 | 215 | 252 | 4 | 41 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeae 41 k rr+++NReAAr+sR+RKka++++Le+ L++ cra_locus_12034_iso_7_len_2222_ver_3 215 AKTLRRLAQNREAARKSRLRKKAYVQQLETSRIRLTQL 252 6889*************************866666555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 4.6E-7 | 210 | 289 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.117 | 214 | 258 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 9.3E-8 | 215 | 256 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14708 | 6.02E-22 | 216 | 268 | No hit | No description |
SuperFamily | SSF57959 | 1.13E-6 | 216 | 258 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 7.5E-8 | 216 | 256 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 219 | 234 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 8.2E-32 | 297 | 371 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 491 aa Download sequence Send to blast |
MAGQRIGGTN LSGSGPSSHH RHHHNTMPYA VFRGLYPPNS FINQEGSAFD FGELEEAIVL 60 QGVKINNNDQ SKKPLYATAT AAAATTVRPA ATLEMFPSWP TRLLHTTRGS CSKSGDQEST 120 DSGSAVNTLS SSRAAEASCR LEAESPVSEK TCSIDPQGFG QRHLHQLPPL QQEQQRTEMS 180 NDGSRTDISH PPQGATAKSA ADKRRGSTSE RVLDAKTLRR LAQNREAARK SRLRKKAYVQ 240 QLETSRIRLT QLEQDLQRAR AQGYYLGGGG SPCGNISSGA AIFDMEYARW LDDDNRHMSE 300 LRTALQAHLP DGDLRVIVDG YISHYDENFR LKGTAAKSDV FHLITGMWTT PAERCFLWMG 360 GFRPSELIKM LIGQLDPLTE QQVVGIYSLQ HSSQQAEEAL SQGLEQLQQS LVETIASGAI 420 NDGMHHMAVA LGKLTNLEGF VRQADNLRQQ TLHQLRRILT VRQAARCFLV IGEYYGRLRA 480 LSSLWASRPR E |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269|PubMed:20805327, ECO:0000269|PubMed:27717447}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00131 | DAP | Transfer from AT1G08320 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by flg22 in leaves. {ECO:0000269|PubMed:27717447}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027106227.1 | 0.0 | LOW QUALITY PROTEIN: transcription factor TGA9-like | ||||
Swissprot | Q93XM6 | 0.0 | TGA9_ARATH; Transcription factor TGA9 | ||||
TrEMBL | A0A068UFE7 | 0.0 | A0A068UFE7_COFCA; Uncharacterized protein | ||||
STRING | EOY33449 | 0.0 | (Theobroma cacao) |
Publications ? help Back to Top | |||
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