PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_12034_iso_5

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

bZIP

Protein Properties

Length: 485aa MW: 53730 Da PI: 7.567

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_12034_iso_5	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33	1.3e-10	183	220	4	41
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeae 41 k rr+++NReAAr+sR+RKka++++Le+ L++ cra_locus_12034_iso_5_len_2494_ver_3 183 AKTLRRLAQNREAARKSRLRKKAYVQQLETSRIRLTQL 220 6889*************************866666555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.6E-7	178	257	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.117	182	226	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	9.2E-8	183	224	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	7.4E-8	184	224	No hit	No description
CDD	cd14708	9.88E-22	184	236	No hit	No description
SuperFamily	SSF57959	1.13E-6	184	226	No hit	No description
PROSITE pattern	PS00036	0	187	202	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	8.0E-32	265	339	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 485 aa Download sequence Send to blast
MGCXFFVGYS NQEGSAFDFG ELEEAIVLQG VKINNNDQSK KPLYATATAA AATTVRPAAT 60 LEMFPSWPTR LLHTTRGSCS KSGDQESTDS GSAVNTLSSS RAAEASCRLE AESPVSEKTC 120 SIDPQGFGQR HLHQLPPLQQ EQQRTEMSND GSRTDISHPP QGATAKSAAD KRRGSTSERV 180 LDAKTLRRLA QNREAARKSR LRKKAYVQQL ETSRIRLTQL EQDLQRARAQ GYYLGGGGSP 240 CGNISSGAAI FDMEYARWLD DDNRHMSELR TALQAHLPDG DLRVIVDGYI SHYDENFRLK 300 GTAAKSDVFH LITGMWTTPA ERCFLWMGGF RPSELIKMLI GQLDPLTEQQ VVGIYSLQHS 360 SQQAEEALSQ GLEQLQQSLV ETIASGAIND GMHHMAVALG KLTNLEGFVR QADNLRQQTL 420 HQLRRILTVR QAARCFLVIG EYYGRLRALS SLWASRPRET MIGEENSSCQ TTTMVQSSQN 480 QFSNF

Sequence ? help Back to Top

Protein Sequence Length: 485 aa Download sequence Send to blast

MGCXFFVGYS NQEGSAFDFG ELEEAIVLQG VKINNNDQSK KPLYATATAA AATTVRPAAT  60
LEMFPSWPTR LLHTTRGSCS KSGDQESTDS GSAVNTLSSS RAAEASCRLE AESPVSEKTC  120
SIDPQGFGQR HLHQLPPLQQ EQQRTEMSND GSRTDISHPP QGATAKSAAD KRRGSTSERV  180
LDAKTLRRLA QNREAARKSR LRKKAYVQQL ETSRIRLTQL EQDLQRARAQ GYYLGGGGSP  240
CGNISSGAAI FDMEYARWLD DDNRHMSELR TALQAHLPDG DLRVIVDGYI SHYDENFRLK  300
GTAAKSDVFH LITGMWTTPA ERCFLWMGGF RPSELIKMLI GQLDPLTEQQ VVGIYSLQHS  360
SQQAEEALSQ GLEQLQQSLV ETIASGAIND GMHHMAVALG KLTNLEGFVR QADNLRQQTL  420
HQLRRILTVR QAARCFLVIG EYYGRLRALS SLWASRPRET MIGEENSSCQ TTTMVQSSQN  480
QFSNF

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00131	DAP	Transfer from AT1G08320	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027106227.1	0.0	LOW QUALITY PROTEIN: transcription factor TGA9-like
Swissprot	Q93XM6	0.0	TGA9_ARATH; Transcription factor TGA9
TrEMBL	A0A068UFE7	0.0	A0A068UFE7_COFCA; Uncharacterized protein
STRING	Gorai.006G111800.1	0.0	(Gossypium raimondii)

Publications ? help Back to Top
Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]