PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_12034_iso_4

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

bZIP

Protein Properties

Length: 517aa MW: 57189 Da PI: 8.2979

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_12034_iso_4	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.9	1.4e-10	215	252	4	41
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeae 41 k rr+++NReAAr+sR+RKka++++Le+ L++ cra_locus_12034_iso_4_len_2290_ver_3 215 AKTLRRLAQNREAARKSRLRKKAYVQQLETSRIRLTQL 252 6889*************************866666555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.6E-7	210	289	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.117	214	258	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.0E-7	215	256	IPR004827	Basic-leucine zipper domain
CDD	cd14708	5.14E-22	216	268	No hit	No description
Gene3D	G3DSA:1.20.5.170	8.1E-8	216	256	No hit	No description
SuperFamily	SSF57959	1.21E-6	216	258	No hit	No description
PROSITE pattern	PS00036	0	219	234	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	8.8E-32	297	371	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 517 aa Download sequence Send to blast
MAGQRIGGTN LSGSGPSSHH RHHHNTMPYA VFRGLYPPNS FINQEGSAFD FGELEEAIVL 60 QGVKINNNDQ SKKPLYATAT AAAATTVRPA ATLEMFPSWP TRLLHTTRGS CSKSGDQEST 120 DSGSAVNTLS SSRAAEASCR LEAESPVSEK TCSIDPQGFG QRHLHQLPPL QQEQQRTEMS 180 NDGSRTDISH PPQGATAKSA ADKRRGSTSE RVLDAKTLRR LAQNREAARK SRLRKKAYVQ 240 QLETSRIRLT QLEQDLQRAR AQGYYLGGGG SPCGNISSGA AIFDMEYARW LDDDNRHMSE 300 LRTALQAHLP DGDLRVIVDG YISHYDENFR LKGTAAKSDV FHLITGMWTT PAERCFLWMG 360 GFRPSELIKM LIGQLDPLTE QQVVGIYSLQ HSSQQAEEAL SQGLEQLQQS LVETIASGAI 420 NDGMHHMAVA LGKLTNLEGF VRQADNLRQQ TLHQLRRILT VRQAARCFLV IGEYYGRLRA 480 LSSLWASRPR ETMIGEENSS CQTTTMVQSS QNQFSNF

Sequence ? help Back to Top

Protein Sequence Length: 517 aa Download sequence Send to blast

MAGQRIGGTN LSGSGPSSHH RHHHNTMPYA VFRGLYPPNS FINQEGSAFD FGELEEAIVL  60
QGVKINNNDQ SKKPLYATAT AAAATTVRPA ATLEMFPSWP TRLLHTTRGS CSKSGDQEST  120
DSGSAVNTLS SSRAAEASCR LEAESPVSEK TCSIDPQGFG QRHLHQLPPL QQEQQRTEMS  180
NDGSRTDISH PPQGATAKSA ADKRRGSTSE RVLDAKTLRR LAQNREAARK SRLRKKAYVQ  240
QLETSRIRLT QLEQDLQRAR AQGYYLGGGG SPCGNISSGA AIFDMEYARW LDDDNRHMSE  300
LRTALQAHLP DGDLRVIVDG YISHYDENFR LKGTAAKSDV FHLITGMWTT PAERCFLWMG  360
GFRPSELIKM LIGQLDPLTE QQVVGIYSLQ HSSQQAEEAL SQGLEQLQQS LVETIASGAI  420
NDGMHHMAVA LGKLTNLEGF VRQADNLRQQ TLHQLRRILT VRQAARCFLV IGEYYGRLRA  480
LSSLWASRPR ETMIGEENSS CQTTTMVQSS QNQFSNF

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00131	DAP	Transfer from AT1G08320	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027106227.1	0.0	LOW QUALITY PROTEIN: transcription factor TGA9-like
Swissprot	Q93XM6	0.0	TGA9_ARATH; Transcription factor TGA9
TrEMBL	A0A068UFE7	0.0	A0A068UFE7_COFCA; Uncharacterized protein
STRING	EOY33449	0.0	(Theobroma cacao)

Publications ? help Back to Top
Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]