PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_12034_iso_3

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

bZIP

Protein Properties

Length: 500aa MW: 55358 Da PI: 7.9373

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_12034_iso_3	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33	1.3e-10	198	235	4	41
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeae 41 k rr+++NReAAr+sR+RKka++++Le+ L++ cra_locus_12034_iso_3_len_2352_ver_3 198 AKTLRRLAQNREAARKSRLRKKAYVQQLETSRIRLTQL 235 6889*************************866666555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.6E-7	193	272	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.117	197	241	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	9.6E-8	198	239	IPR004827	Basic-leucine zipper domain
CDD	cd14708	3.10E-22	199	251	No hit	No description
SuperFamily	SSF57959	1.13E-6	199	241	No hit	No description
Gene3D	G3DSA:1.20.5.170	7.7E-8	199	239	No hit	No description
PROSITE pattern	PS00036	0	202	217	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	8.4E-32	280	354	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 500 aa Download sequence Send to blast
MAGQRIGGTN LSGSGPSSHH RHHHNTMPYA VFRGLYPPNS FINQEGSAFD FGELEEAIVL 60 QGVKINNNDQ SKKPLYATAT AAAATTVRPA ATLEMFPSWP LDSDSGSAVN TLSSSRAAEA 120 SCRLEAESPV SEKTCSIDPQ GFGQRHLHQL PPLQQEQQRT EMSNDGSRTD ISHPPQGATA 180 KSAADKRRGS TSERVLDAKT LRRLAQNREA ARKSRLRKKA YVQQLETSRI RLTQLEQDLQ 240 RARAQGYYLG GGGSPCGNIS SGAAIFDMEY ARWLDDDNRH MSELRTALQA HLPDGDLRVI 300 VDGYISHYDE NFRLKGTAAK SDVFHLITGM WTTPAERCFL WMGGFRPSEL IKMLIGQLDP 360 LTEQQVVGIY SLQHSSQQAE EALSQGLEQL QQSLVETIAS GAINDGMHHM AVALGKLTNL 420 EGFVRQADNL RQQTLHQLRR ILTVRQAARC FLVIGEYYGR LRALSSLWAS RPRETMIGEE 480 NSSCQTTTMV QSSQNQFSNF

Sequence ? help Back to Top

Protein Sequence Length: 500 aa Download sequence Send to blast

MAGQRIGGTN LSGSGPSSHH RHHHNTMPYA VFRGLYPPNS FINQEGSAFD FGELEEAIVL  60
QGVKINNNDQ SKKPLYATAT AAAATTVRPA ATLEMFPSWP LDSDSGSAVN TLSSSRAAEA  120
SCRLEAESPV SEKTCSIDPQ GFGQRHLHQL PPLQQEQQRT EMSNDGSRTD ISHPPQGATA  180
KSAADKRRGS TSERVLDAKT LRRLAQNREA ARKSRLRKKA YVQQLETSRI RLTQLEQDLQ  240
RARAQGYYLG GGGSPCGNIS SGAAIFDMEY ARWLDDDNRH MSELRTALQA HLPDGDLRVI  300
VDGYISHYDE NFRLKGTAAK SDVFHLITGM WTTPAERCFL WMGGFRPSEL IKMLIGQLDP  360
LTEQQVVGIY SLQHSSQQAE EALSQGLEQL QQSLVETIAS GAINDGMHHM AVALGKLTNL  420
EGFVRQADNL RQQTLHQLRR ILTVRQAARC FLVIGEYYGR LRALSSLWAS RPRETMIGEE  480
NSSCQTTTMV QSSQNQFSNF

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00131	DAP	Transfer from AT1G08320	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027106227.1	0.0	LOW QUALITY PROTEIN: transcription factor TGA9-like
Swissprot	Q93XM6	0.0	TGA9_ARATH; Transcription factor TGA9
TrEMBL	A0A068UFE7	0.0	A0A068UFE7_COFCA; Uncharacterized protein
STRING	EOY33449	0.0	(Theobroma cacao)

Publications ? help Back to Top
Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]