PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_12033_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

ERF

Protein Properties

Length: 268aa MW: 29329.5 Da PI: 4.7209

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_12033_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	59.2	1e-18	76	126	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr + +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++ a+++++g cra_locus_12033_iso_2_len_1085_ver_3 76 PVYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAALSIKG 126 68***998.******843...6*********************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	5.3E-13	76	126	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.42	77	134	IPR001471	AP2/ERF domain
SMART	SM00380	7.5E-36	77	140	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	6.8E-32	77	135	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.24E-21	77	135	IPR016177	DNA-binding domain
CDD	cd00018	2.52E-32	78	136	No hit	No description
PRINTS	PR00367	2.9E-10	78	89	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.9E-10	100	116	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
XVFPPIILTT IFPHFISSPP NQMMMSTTTQ LQNSDPEFSF SSNSPTSPLS PTGSNQKPES 60 DSAKKIKRIR DSSKHPVYRG VRMRNWGKWV SEIREPRKKS RIWLGTFPTP EMAARAHDVA 120 ALSIKGNSAI LNFPELAASF PRPVSCSPRD VQAAAAKAAA MDNFDSSSSS SSSVATCQSP 180 SSTMSSLVSA IDLSTSTSSE EELCEIIELP SLGTSFEESL ELKNDFAYFD SVDHGWMYPP 240 ITTALPLDDD DDAGAFSATF ESLLWNYY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	4e-19	72	134	9	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027079809.1	8e-86	ethylene-responsive transcription factor TINY-like
Refseq	XP_027082095.1	8e-86	ethylene-responsive transcription factor TINY-like
Swissprot	Q9LYD3	9e-71	DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBL	A0A068UI56	4e-83	A0A068UI56_COFCA; Uncharacterized protein
STRING	XP_002516502.1	1e-81	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA212	24	225

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Galuschka C,Schindler M,Bülow L,Hehl R AthaMap web tools for the analysis and identification of co-regulated genes. Nucleic Acids Res., 2007. 35(Database issue): p. D857-62 [PMID:17148485]