PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_12033_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ERF
Protein Properties Length: 267aa    MW: 29210.6 Da    PI: 4.7209
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_12033_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.29.9e-1975125155
                                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                           + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  cra_locus_12033_iso_1_len_1084_ver_3  75 PVYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAALSIKG 125
                                           68*****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.3E-1375125IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.7E-3276134IPR001471AP2/ERF domain
SMARTSM003807.5E-3676139IPR001471AP2/ERF domain
PROSITE profilePS5103223.4276133IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-2176134IPR016177DNA-binding domain
PRINTSPR003672.9E-107788IPR001471AP2/ERF domain
CDDcd000182.47E-3277135No hitNo description
PRINTSPR003672.9E-1099115IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
VFPPIILTTI FPHFISSPPN QMMMSTTTQL QNSDPEFSFS SNSPTSPLSP TGSNQKPESD  60
SAKKIKRIRD SSKHPVYRGV RMRNWGKWVS EIREPRKKSR IWLGTFPTPE MAARAHDVAA  120
LSIKGNSAIL NFPELAASFP RPVSCSPRDV QAAAAKAAAM DNFDSSSSSS SSVATCQSPS  180
STMSSLVSAI DLSTSTSSEE ELCEIIELPS LGTSFEESLE LKNDFAYFDS VDHGWMYPPI  240
TTALPLDDDD DAGAFSATFE SLLWNYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1971133972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027079809.18e-86ethylene-responsive transcription factor TINY-like
RefseqXP_027082095.18e-86ethylene-responsive transcription factor TINY-like
SwissprotQ9LYD39e-71DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A068UI564e-83A0A068UI56_COFCA; Uncharacterized protein
STRINGXP_002516502.11e-81(Ricinus communis)
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]