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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | cra_locus_12026_iso_4 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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| Family | NAC | ||||||||
| Protein Properties | Length: 288aa MW: 33016.6 Da PI: 7.9286 | ||||||||
| Description | NAC family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | NAM | 168.8 | 1.7e-52 | 7 | 131 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkr 73
lppGfrFhPtdeelv +yL++k++++++ + +i+e+d+yk++PwdLp ++ +ekewyfFs+rd+ky++g+r
cra_locus_12026_iso_4_len_5472_ver_3 7 LPPGFRFHPTDEELVIHYLCRKCASQPIAV-PIIAEIDLYKYNPWDLPGMALYGEKEWYFFSPRDRKYPNGSR 78
79**************************99.88***************6666689****************** PP
NAM 74 knratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
+nra+ sgyWkatg dk++ + + +g+kk Lvfy g+apkgekt+W+mheyrl
cra_locus_12026_iso_4_len_5472_ver_3 79 PNRAAGSGYWKATGADKPIGN--PKPMGIKKALVFYAGKAPKGEKTNWIMHEYRL 131
*******************98..789***************************98 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF101941 | 2.88E-63 | 3 | 158 | IPR003441 | NAC domain |
| PROSITE profile | PS51005 | 60.719 | 7 | 158 | IPR003441 | NAC domain |
| Pfam | PF02365 | 1.4E-27 | 8 | 131 | IPR003441 | NAC domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0009611 | Biological Process | response to wounding | ||||
| GO:0009788 | Biological Process | negative regulation of abscisic acid-activated signaling pathway | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 288 aa Download sequence Send to blast |
MAAELQLPPG FRFHPTDEEL VIHYLCRKCA SQPIAVPIIA EIDLYKYNPW DLPGMALYGE 60 KEWYFFSPRD RKYPNGSRPN RAAGSGYWKA TGADKPIGNP KPMGIKKALV FYAGKAPKGE 120 KTNWIMHEYR LADVDRSARK RNNSLRLDDW VLCRIYNKKG TIDKQQMMGI RKAASQVIEE 180 EDKKPEILKS VPETTPVVYS DFMYLDPSDS VPKLHTNSSS SEQVVSPEFS QNTCEVQSEP 240 KLNDWEKSTS ALDFPFSYDG NVLMNTQFPS NYQMSPLQDM FMFLQKPF |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 3ulx_A | 2e-81 | 3 | 164 | 11 | 174 | Stress-induced transcription factor NAC1 |
| Search in ModeBase | ||||||
| Binding Motif ? help Back to Top | |||
|---|---|---|---|
| Motif ID | Method | Source | Motif file |
| MP00121 | DAP | Transfer from AT1G01720 | Download |
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| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_027148352.1 | 1e-172 | NAC domain-containing protein 2-like | ||||
| Swissprot | Q39013 | 1e-140 | NAC2_ARATH; NAC domain-containing protein 2 | ||||
| TrEMBL | A0A068UR72 | 1e-171 | A0A068UR72_COFCA; Uncharacterized protein | ||||
| STRING | XP_009759475.1 | 1e-160 | (Nicotiana sylvestris) | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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