PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_12014_iso_9 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 394aa MW: 44330.8 Da PI: 9.5422 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 334.2 | 3.5e-102 | 83 | 394 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkg.yye.........paaslken..lglqlmssiaerdakirernlalsekkaavaerdma 59 mdd g+re r++ yy+ p+ ++ke+ +++++ +++aerda+i+er+ alsek++a+a+rd a cra_locus_12014_iso_9_len_1519_ver_3 83 MDDGGHREsrRQRMdYYKggqspwnmmPQYQMKEQifMNTKISALLAERDAAIEERDRALSEKREAIADRDLA 155 9*****999777778*********9997778887633788999999*************************** PP GAGA_bind 60 flqrdkalaernkalverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeekl 132 +qrd+a+aer++al erdn+++al+++e +++ al g+++ +gtk i+++ + p+ +s++ +re +++ cra_locus_12014_iso_9_len_1519_ver_3 156 IQQRDTAIAERDNALRERDNAIAALQFQESTMSAAL--GSGSQRGTKRINHHSD-HYPRNMQSTQSMRELQII 225 ***************************999876665..778889******9888.556666777789****** PP GAGA_bind 133 ealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidl.vlngvslD 204 ea+pi+ +e +++ k r + kk ++k ++ kk +k ++ +++ + + skae++ +dl +n++++D cra_locus_12014_iso_9_len_1519_ver_3 226 EAFPITAISSEDAKSHLLK-RTKVKKGISTKGTRSSKKAKKVGEDLNRHVTTDGSKAEWEAQDLsCINEINFD 297 ****998777776666555.44445555555554444455555555555555669*********88******* PP GAGA_bind 205 estlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGy 277 est+P+PvC+CtG+ rqCYkWGnGGWqS+CCtt++SvyPLP+ +++r+aR++grKmS+++f +lL ++aa G+ cra_locus_12014_iso_9_len_1519_ver_3 298 ESTMPIPVCTCTGVARQCYKWGNGGWQSSCCTTSLSVYPLPQIPNKRHARMGGRKMSGSVFGRLLTRVAAAGH 370 ************************************************************************* PP GAGA_bind 278 dlsnpvDLkdhWAkHGtnkfvtir 301 dls p+DLk++WAkHGtn+++ti+ cra_locus_12014_iso_9_len_1519_ver_3 371 DLSIPLDLKNYWAKHGTNRYITIK 394 ***********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF06217 | 4.9E-93 | 83 | 394 | IPR010409 | GAGA-binding transcriptional activator |
SMART | SM01226 | 5.4E-133 | 83 | 394 | IPR010409 | GAGA-binding transcriptional activator |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0050793 | Biological Process | regulation of developmental process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 394 aa Download sequence Send to blast |
XSFSPSPANR SQFLSDAVPV AXLIKLKLSC PHSPSPFIIS PFSYSQRRAD FTCSSCTVDP 60 RSKDLVAYIT VFYLEEHLQC VYMDDGGHRE SRRQRMDYYK GGQSPWNMMP QYQMKEQIFM 120 NTKISALLAE RDAAIEERDR ALSEKREAIA DRDLAIQQRD TAIAERDNAL RERDNAIAAL 180 QFQESTMSAA LGSGSQRGTK RINHHSDHYP RNMQSTQSMR ELQIIEAFPI TAISSEDAKS 240 HLLKRTKVKK GISTKGTRSS KKAKKVGEDL NRHVTTDGSK AEWEAQDLSC INEINFDEST 300 MPIPVCTCTG VARQCYKWGN GGWQSSCCTT SLSVYPLPQI PNKRHARMGG RKMSGSVFGR 360 LLTRVAAAGH DLSIPLDLKN YWAKHGTNRY ITIK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 241 | 249 | LLKRTKVKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027160005.1 | 1e-174 | protein BASIC PENTACYSTEINE4-like | ||||
Refseq | XP_027160006.1 | 1e-174 | protein BASIC PENTACYSTEINE4-like | ||||
Refseq | XP_027160008.1 | 1e-174 | protein BASIC PENTACYSTEINE4-like | ||||
Refseq | XP_027160009.1 | 1e-174 | protein BASIC PENTACYSTEINE4-like | ||||
Refseq | XP_027160010.1 | 1e-174 | protein BASIC PENTACYSTEINE4-like | ||||
Swissprot | Q8S8C6 | 1e-115 | BPC4_ARATH; Protein BASIC PENTACYSTEINE4 | ||||
TrEMBL | A0A068TKY0 | 1e-173 | A0A068TKY0_COFCA; Uncharacterized protein | ||||
STRING | XP_009804621.1 | 1e-158 | (Nicotiana sylvestris) |