PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_12014_iso_3
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family BBR-BPC
Protein Properties Length: 450aa    MW: 50927.1 Da    PI: 8.868
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_12014_iso_3genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind333.65.3e-1021394501301
                             GAGA_bind   1 mdddgsre..rnkg.yye.........paaslken..lglqlmssiaerdakirernlalsekkaavaerdma 59 
                                           mdd g+re  r++  yy+         p+ ++ke+  +++++ +++aerda+i+er+ alsek++a+a+rd a
  cra_locus_12014_iso_3_len_1686_ver_3 139 MDDGGHREsrRQRMdYYKggqspwnmmPQYQMKEQifMNTKISALLAERDAAIEERDRALSEKREAIADRDLA 211
                                           9*****999777778*********9997778887633788999999*************************** PP

                             GAGA_bind  60 flqrdkalaernkalverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeekl 132
                                            +qrd+a+aer++al erdn+++al+++e +++ al  g+++ +gtk i+++   + p+  +s++ +re +++
  cra_locus_12014_iso_3_len_1686_ver_3 212 IQQRDTAIAERDNALRERDNAIAALQFQESTMSAAL--GSGSQRGTKRINHHSD-HYPRNMQSTQSMRELQII 281
                                           ***************************999876665..778889******9888.556666777789****** PP

                             GAGA_bind 133 ealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidl.vlngvslD 204
                                           ea+pi+   +e  +++  k r + kk  ++k ++  kk +k  ++ +++ + + skae++ +dl  +n++++D
  cra_locus_12014_iso_3_len_1686_ver_3 282 EAFPITAISSEDAKSHLLK-RTKVKKGISTKGTRSSKKAKKVGEDLNRHVTTDGSKAEWEAQDLsCINEINFD 353
                                           ****998777776666555.44445555555554444455555555555555669*********88******* PP

                             GAGA_bind 205 estlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGy 277
                                           est+P+PvC+CtG+ rqCYkWGnGGWqS+CCtt++SvyPLP+ +++r+aR++grKmS+++f +lL ++aa G+
  cra_locus_12014_iso_3_len_1686_ver_3 354 ESTMPIPVCTCTGVARQCYKWGNGGWQSSCCTTSLSVYPLPQIPNKRHARMGGRKMSGSVFGRLLTRVAAAGH 426
                                           ************************************************************************* PP

                             GAGA_bind 278 dlsnpvDLkdhWAkHGtnkfvtir 301
                                           dls p+DLk++WAkHGtn+++ti+
  cra_locus_12014_iso_3_len_1686_ver_3 427 DLSIPLDLKNYWAKHGTNRYITIK 450
                                           ***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062177.6E-93139450IPR010409GAGA-binding transcriptional activator
SMARTSM012265.4E-133139450IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
XKFLSFTCQP LSVSLRCRSG SLAHQAQTFL STFSVTVYHL PVLLFSTEGR FYMFILHDLV  60
LEDSGGEKLS AQFFEGSSLE DLELNLGAXE YNWSVEGTMK VXGFIWIGFS WKKVDPRSKD  120
LVAYITVFYL EEHLQCVYMD DGGHRESRRQ RMDYYKGGQS PWNMMPQYQM KEQIFMNTKI  180
SALLAERDAA IEERDRALSE KREAIADRDL AIQQRDTAIA ERDNALRERD NAIAALQFQE  240
STMSAALGSG SQRGTKRINH HSDHYPRNMQ STQSMRELQI IEAFPITAIS SEDAKSHLLK  300
RTKVKKGIST KGTRSSKKAK KVGEDLNRHV TTDGSKAEWE AQDLSCINEI NFDESTMPIP  360
VCTCTGVARQ CYKWGNGGWQ SSCCTTSLSV YPLPQIPNKR HARMGGRKMS GSVFGRLLTR  420
VAAAGHDLSI PLDLKNYWAK HGTNRYITIK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1297305LLKRTKVKK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027160005.11e-173protein BASIC PENTACYSTEINE4-like
RefseqXP_027160006.11e-173protein BASIC PENTACYSTEINE4-like
RefseqXP_027160008.11e-173protein BASIC PENTACYSTEINE4-like
RefseqXP_027160009.11e-173protein BASIC PENTACYSTEINE4-like
RefseqXP_027160010.11e-173protein BASIC PENTACYSTEINE4-like
SwissprotQ8S8C61e-115BPC4_ARATH; Protein BASIC PENTACYSTEINE4
TrEMBLA0A068TKY01e-172A0A068TKY0_COFCA; Uncharacterized protein
STRINGXP_009804621.11e-158(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA92872128