PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_11952_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family GRAS
Protein Properties Length: 439aa    MW: 49354.4 Da    PI: 5.7097
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_11952_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS118.87e-37511733126
                                  GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekns 74 
                                           +lL+ cA+ v+ g+le+a+  L+++s lasp+gd +qR++ayfteALa r+++   ++l kal++++t   + 
  cra_locus_11952_iso_1_len_1349_ver_3  51 NLLTICAKWVAVGSLENASMGLEQISLLASPEGDIVQRIVAYFTEALADRVLKcWRPGLHKALNSTKTV--SA 121
                                           7999*************************************************4457888888887776..69 PP

                                  GRAS  75 seelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWp 126
                                           se + a+klf+e +P+l++s++++NqaIlea+ege+ vHiiD+   +++QW+
  cra_locus_11952_iso_1_len_1349_ver_3 122 SEMILAQKLFFEFCPFLRLSYVITNQAILEAMEGEKVVHIIDLHSFEPAQWI 173
                                           9**************************************************7 PP
2GRAS246.69.6e-76175430154374
                                  GRAS 154 skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrll............ 214
                                           +ke l +++ rL++ Ae+l++pf+fn+ v++rle+l++ +L vk+gEa+aV++vlqlh++l            
  cra_locus_11952_iso_1_len_1349_ver_3 175 QKEVLDQMAVRLNEAAEKLDIPFQFNP-VVSRLENLDIGSLPVKTGEAVAVSSVLQLHSMLafddensrrnsp 246
                                           6899***********************.7******************************************** PP

                                  GRAS 215 ........................desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealey 263
                                                                   + s+s++ +  ++L+ +++lsPk++vv+eqe++hn++s+ er+ eal++
  cra_locus_11952_iso_1_len_1349_ver_3 247 lpmpmiprtlgdfldspdsttsssALSLSQAPKSLSFLNGLWGLSPKLMVVTEQESNHNGNSLIERVNEALKF 319
                                           *******************99966444555557789************************************* PP

                                  GRAS 264 ysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakq 336
                                           y+alfd+le+++pr   er+k+E++l+g+ei+n++aceg er+ rhe+lekW  rle aGF+ v+ls++ + q
  cra_locus_11952_iso_1_len_1349_ver_3 320 YAALFDCLENTVPRSPGERQKIEKMLFGEEIKNIIACEGVERKSRHEKLEKWIPRLELAGFGRVHLSYNGMRQ 392
                                           ************************************************************************* PP

                                  GRAS 337 aklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                           a+++l+ ++ dg+++++e+gs++++W+d pL+svSaWr
  cra_locus_11952_iso_1_len_1349_ver_3 393 ARRVLQSCNYDGFEIKDENGSFIICWHDDPLFSVSAWR 430
                                           *************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098539.94323410IPR005202Transcription factor GRAS
PfamPF035142.4E-3451173IPR005202Transcription factor GRAS
PfamPF035143.3E-73175430IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MAGLAQEEGS SSVSSSPLQF FSLMSLSPGI GSPYTFFREM KSDERGMWLF NLLTICAKWV  60
AVGSLENASM GLEQISLLAS PEGDIVQRIV AYFTEALADR VLKCWRPGLH KALNSTKTVS  120
ASEMILAQKL FFEFCPFLRL SYVITNQAIL EAMEGEKVVH IIDLHSFEPA QWINQKEVLD  180
QMAVRLNEAA EKLDIPFQFN PVVSRLENLD IGSLPVKTGE AVAVSSVLQL HSMLAFDDEN  240
SRRNSPLPMP MIPRTLGDFL DSPDSTTSSS ALSLSQAPKS LSFLNGLWGL SPKLMVVTEQ  300
ESNHNGNSLI ERVNEALKFY AALFDCLENT VPRSPGERQK IEKMLFGEEI KNIIACEGVE  360
RKSRHEKLEK WIPRLELAGF GRVHLSYNGM RQARRVLQSC NYDGFEIKDE NGSFIICWHD  420
DPLFSVSAWR FKRFYXCSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-47334292377Protein SCARECROW
5b3h_D1e-47334292377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027103016.10.0scarecrow-like protein 3
RefseqXP_027103018.10.0scarecrow-like protein 3
RefseqXP_027122018.10.0scarecrow-like protein 3
RefseqXP_027158097.10.0scarecrow-like protein 3
SwissprotQ9LPR81e-169SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A438GU360.0A0A438GU36_VITVI; Scarecrow-like protein 3
TrEMBLF6GX840.0F6GX84_VITVI; Uncharacterized protein
STRINGVIT_13s0019g01220.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29142453
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]