PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_11924_iso_5
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family GRF
Protein Properties Length: 482aa    MW: 52057.8 Da    PI: 9.0839
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_11924_iso_5genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC66.73.2e-21153197145
                                   WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                                           d+ep rCrRtDGKkWRC  rv++++k+C rH+hrg++rsrk +e+
  cra_locus_11924_iso_5_len_1691_ver_3 153 DPEPERCRRTDGKKWRCHGRVVPDQKYCPRHMHRGSQRSRKLVEA 197
                                           79****************************************997 PP
2WRC66.82.9e-21360399140
                                   WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsr 40 
                                           +ae++rCrRtDGK+WRCsr+v+++kk+CE Hlhrg +r +
  cra_locus_11924_iso_5_len_1691_ver_3 360 EAEELRCRRTDGKRWRCSRDVVPDKKYCENHLHRGAKRAT 399
                                           589********************************99975 PP
3QLQ48.13.6e-1797131337
                                   QLQ   3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                                           FTaaQ+q+L  Q+ ++KyL++++PvP +L+++++k
  cra_locus_11924_iso_5_len_1691_ver_3  97 FTAAQFQELYLQVVIFKYLSSGLPVPFHLVLPVWK 131
                                           *********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.5E-695131IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166618.99296131IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088804.6E-1297130IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166722.747153197IPR014977WRC domain
PfamPF088792.7E-18154196IPR014977WRC domain
PROSITE profilePS5166721.773360404IPR014977WRC domain
PfamPF088794.6E-18361399IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
NSPPPVVTCN LQISPFLGLY FTFYYSSFLK TKNPCKGMQF HPLSTGSFVY SGKGGGGLGD  60
EIKGKREGSP LINLELKIGG IESQSCLIKK EEENLLFTAA QFQELYLQVV IFKYLSSGLP  120
VPFHLVLPVW KSLFSSFGCG FPPQELVHRG IMDPEPERCR RTDGKKWRCH GRVVPDQKYC  180
PRHMHRGSQR SRKLVEASRD ILKLNTEILN PDKSRSRTIS SCSAITNCRS SVPISTSLDL  240
TVPSAIVEVG SSSVSYNSNS EGGSPPSIVQ VDSGAATSSL LKGQASKNSK GNESKRNDSP  300
GLGLGLSHFS TGTNWCNEGN KSSGKPSIAA GLCVPPRSVY QGGIGTGGSS LNVDKKTGVE  360
AEELRCRRTD GKRWRCSRDV VPDKKYCENH LHRGAKRATL DSKSTTGAPR ASSSCMAGTY  420
IIPEKVKNCR NILNTNLSIS IETTPVHQIV DSDDSSSSSD SDATTISDEN ASVSPPTLTL  480
SP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027108172.11e-113growth-regulating factor 9 isoform X1
RefseqXP_027172919.11e-113growth-regulating factor 9-like isoform X1
TrEMBLA0A068VDN41e-111A0A068VDN4_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77981922