PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_11924_iso_4
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family GRF
Protein Properties Length: 441aa    MW: 47500.6 Da    PI: 9.1246
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_11924_iso_4genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC66.82.8e-21112156145
                                   WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                                           d+ep rCrRtDGKkWRC  rv++++k+C rH+hrg++rsrk +e+
  cra_locus_11924_iso_4_len_1885_ver_3 112 DPEPERCRRTDGKKWRCHGRVVPDQKYCPRHMHRGSQRSRKLVEA 156
                                           79****************************************997 PP
2WRC672.6e-21319358140
                                   WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsr 40 
                                           +ae++rCrRtDGK+WRCsr+v+++kk+CE Hlhrg +r +
  cra_locus_11924_iso_4_len_1885_ver_3 319 EAEELRCRRTDGKRWRCSRDVVPDKKYCENHLHRGAKRAT 358
                                           589********************************99975 PP
3QLQ48.23.2e-175690337
                                   QLQ  3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                                          FTaaQ+q+L  Q+ ++KyL++++PvP +L+++++k
  cra_locus_11924_iso_4_len_1885_ver_3 56 FTAAQFQELYLQVVIFKYLSSGLPVPFHLVLPVWK 90
                                          *********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.5E-65490IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166618.9925590IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088804.1E-125689IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166722.747112156IPR014977WRC domain
PfamPF088792.4E-18113155IPR014977WRC domain
PROSITE profilePS5166721.773319363IPR014977WRC domain
PfamPF088794.1E-18320358IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
IKKLPASCCH RKGGGGLGDE IKGKREGSPL INLELKIGGI ESQSCLIKKE EENLLFTAAQ  60
FQELYLQVVI FKYLSSGLPV PFHLVLPVWK SLFSSFGCGF PPQELVHRGI MDPEPERCRR  120
TDGKKWRCHG RVVPDQKYCP RHMHRGSQRS RKLVEASRDI LKLNTEILNP DKSRSRTISS  180
CSAITNCRSS VPISTSLDLT VPSAIVEVGS SSVSYNSNSE GGSPPSIVQV DSGAATSSLL  240
KGQASKNSKG NESKRNDSPG LGLGLSHFST GTNWCNEGNK SSGKPSIAAG LCVPPRSVYQ  300
GGIGTGGSSL NVDKKTGVEA EELRCRRTDG KRWRCSRDVV PDKKYCENHL HRGAKRATLD  360
SKSTTGAPRA SSSCMAGTYI IPEKVKNCRN ILNTNLSISI ETTPVHQIVD SDDSSSSSDS  420
DATTISDENA SVSPPTLTLS P
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027108172.11e-113growth-regulating factor 9 isoform X1
RefseqXP_027108173.11e-113growth-regulating factor 9 isoform X2
RefseqXP_027172919.11e-113growth-regulating factor 9-like isoform X1
RefseqXP_027172920.11e-113growth-regulating factor 9-like isoform X2
TrEMBLA0A068VDN41e-112A0A068VDN4_COFCA; Uncharacterized protein