PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_11924_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family GRF
Protein Properties Length: 439aa    MW: 47241.2 Da    PI: 8.9652
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_11924_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC66.82.8e-21110154145
                                   WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                                           d+ep rCrRtDGKkWRC  rv++++k+C rH+hrg++rsrk +e+
  cra_locus_11924_iso_2_len_1562_ver_3 110 DPEPERCRRTDGKKWRCHGRVVPDQKYCPRHMHRGSQRSRKLVEA 154
                                           79****************************************997 PP
2WRC672.6e-21317356140
                                   WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsr 40 
                                           +ae++rCrRtDGK+WRCsr+v+++kk+CE Hlhrg +r +
  cra_locus_11924_iso_2_len_1562_ver_3 317 EAEELRCRRTDGKRWRCSRDVVPDKKYCENHLHRGAKRAT 356
                                           589********************************99975 PP
3QLQ48.23.2e-175488337
                                   QLQ  3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                                          FTaaQ+q+L  Q+ ++KyL++++PvP +L+++++k
  cra_locus_11924_iso_2_len_1562_ver_3 54 FTAAQFQELYLQVVIFKYLSSGLPVPFHLVLPVWK 88
                                          *********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.5E-65288IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166618.9925388IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088804.1E-125487IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166722.747110154IPR014977WRC domain
PfamPF088792.4E-18111153IPR014977WRC domain
PROSITE profilePS5166721.773317361IPR014977WRC domain
PfamPF088794.1E-18318356IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
NSPPPVVTWK GGGGLGDEIK GKREGSPLIN LELKIGGIES QSCLIKKEEE NLLFTAAQFQ  60
ELYLQVVIFK YLSSGLPVPF HLVLPVWKSL FSSFGCGFPP QELVHRGIMD PEPERCRRTD  120
GKKWRCHGRV VPDQKYCPRH MHRGSQRSRK LVEASRDILK LNTEILNPDK SRSRTISSCS  180
AITNCRSSVP ISTSLDLTVP SAIVEVGSSS VSYNSNSEGG SPPSIVQVDS GAATSSLLKG  240
QASKNSKGNE SKRNDSPGLG LGLSHFSTGT NWCNEGNKSS GKPSIAAGLC VPPRSVYQGG  300
IGTGGSSLNV DKKTGVEAEE LRCRRTDGKR WRCSRDVVPD KKYCENHLHR GAKRATLDSK  360
STTGAPRASS SCMAGTYIIP EKVKNCRNIL NTNLSISIET TPVHQIVDSD DSSSSSDSDA  420
TTISDENASV SPPTLTLSP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027108173.11e-114growth-regulating factor 9 isoform X2
RefseqXP_027172920.11e-114growth-regulating factor 9-like isoform X2
TrEMBLA0A068VDN41e-112A0A068VDN4_COFCA; Uncharacterized protein