PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_11924_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family GRF
Protein Properties Length: 433aa    MW: 46425 Da    PI: 8.8537
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_11924_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC66.92.8e-21104148145
                                   WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                                           d+ep rCrRtDGKkWRC  rv++++k+C rH+hrg++rsrk +e+
  cra_locus_11924_iso_1_len_1543_ver_3 104 DPEPERCRRTDGKKWRCHGRVVPDQKYCPRHMHRGSQRSRKLVEA 148
                                           79****************************************997 PP
2WRC672.5e-21311350140
                                   WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsr 40 
                                           +ae++rCrRtDGK+WRCsr+v+++kk+CE Hlhrg +r +
  cra_locus_11924_iso_1_len_1543_ver_3 311 EAEELRCRRTDGKRWRCSRDVVPDKKYCENHLHRGAKRAT 350
                                           589********************************99975 PP
3QLQ48.33.1e-174882337
                                   QLQ  3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                                          FTaaQ+q+L  Q+ ++KyL++++PvP +L+++++k
  cra_locus_11924_iso_1_len_1543_ver_3 48 FTAAQFQELYLQVVIFKYLSSGLPVPFHLVLPVWK 82
                                          *********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.5E-64682IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166618.9924782IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088804.0E-124881IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166722.747104148IPR014977WRC domain
PfamPF088792.3E-18105147IPR014977WRC domain
PROSITE profilePS5166721.773311355IPR014977WRC domain
PfamPF088794.0E-18312350IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
XGGGGGGGLG DEIKGKREGS PLINLELKIG GIESQSCLIK KEEENLLFTA AQFQELYLQV  60
VIFKYLSSGL PVPFHLVLPV WKSLFSSFGC GFPPQELVHR GIMDPEPERC RRTDGKKWRC  120
HGRVVPDQKY CPRHMHRGSQ RSRKLVEASR DILKLNTEIL NPDKSRSRTI SSCSAITNCR  180
SSVPISTSLD LTVPSAIVEV GSSSVSYNSN SEGGSPPSIV QVDSGAATSS LLKGQASKNS  240
KGNESKRNDS PGLGLGLSHF STGTNWCNEG NKSSGKPSIA AGLCVPPRSV YQGGIGTGGS  300
SLNVDKKTGV EAEELRCRRT DGKRWRCSRD VVPDKKYCEN HLHRGAKRAT LDSKSTTGAP  360
RASSSCMAGT YIIPEKVKNC RNILNTNLSI SIETTPVHQI VDSDDSSSSS DSDATTISDE  420
NASVSPPTLT LSP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027108172.11e-113growth-regulating factor 9 isoform X1
RefseqXP_027108173.11e-114growth-regulating factor 9 isoform X2
RefseqXP_027172919.11e-113growth-regulating factor 9-like isoform X1
RefseqXP_027172920.11e-114growth-regulating factor 9-like isoform X2
TrEMBLA0A068VDN41e-112A0A068VDN4_COFCA; Uncharacterized protein