PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_11884_iso_6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | TALE | ||||||||
Protein Properties | Length: 173aa MW: 19796.1 Da PI: 5.8822 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 25.7 | 2e-08 | 122 | 155 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp++e++++L +++gL+ +q+ +WF N+R + cra_locus_11884_iso_6_len_2780_ver_3 122 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 155 469*****************************87 PP | |||||||
2 | ELK | 28.4 | 3.7e-10 | 76 | 97 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK++L+++Y+++++++++E++ cra_locus_11884_iso_6_len_2780_ver_3 76 ELKRELKQGYKEKIVDIREEIL 97 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51213 | 9.917 | 76 | 96 | IPR005539 | ELK domain |
Pfam | PF03789 | 1.3E-6 | 76 | 97 | IPR005539 | ELK domain |
SMART | SM01188 | 0.0017 | 76 | 97 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.726 | 96 | 159 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.4E-11 | 98 | 163 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 6.84E-17 | 98 | 162 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.97E-11 | 99 | 160 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.0E-26 | 103 | 160 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 3.1E-18 | 116 | 155 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0009722 | Biological Process | detection of cytokinin stimulus | ||||
GO:0071345 | Biological Process | cellular response to cytokine stimulus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MEAVMACWEI EQSLQSLTGV SPGEGTGATM SDDDDDQVDS DANLFDGSLD DPDSMGFGPL 60 IPTESERSLM ERVRQELKRE LKQGYKEKIV DIREEILRKR RAGKLPGDTT SVLKAWWQSH 120 SKWPYPTEED KARLVQETGL QLKQINNWFI NQRKRNWHSN PSSSTASKSK RKR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1x2n_A | 4e-14 | 99 | 163 | 8 | 72 | Homeobox protein PKNOX1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 152 | 172 | RKRNWHSNPSSSTASKSKRKR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027354710.1 | 1e-117 | homeobox protein knotted-1-like 3 isoform X1 | ||||
Refseq | XP_027354711.1 | 1e-117 | homeobox protein knotted-1-like 3 isoform X2 | ||||
Swissprot | P48000 | 1e-111 | KNAT3_ARATH; Homeobox protein knotted-1-like 3 | ||||
TrEMBL | A0A0V0ID04 | 1e-116 | A0A0V0ID04_SOLCH; Putative homeobox protein knotted-1-like 3-like | ||||
STRING | POPTR_0006s27560.1 | 1e-117 | (Populus trichocarpa) | ||||
STRING | XP_007136985.1 | 1e-117 | (Phaseolus vulgaris) |
Publications ? help Back to Top | |||
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