PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_11884_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | TALE | ||||||||
Protein Properties | Length: 455aa MW: 50229.4 Da PI: 5.9975 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 23.3 | 1.1e-07 | 404 | 437 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp++e++++L +++gL+ +q+ +WF N+R + cra_locus_11884_iso_1_len_2125_ver_3 404 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 437 469*****************************87 PP | |||||||
2 | ELK | 26.7 | 1.3e-09 | 358 | 379 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK++L+++Y+++++++++E++ cra_locus_11884_iso_1_len_2125_ver_3 358 ELKRELKQGYKEKIVDIREEIL 379 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 1.6E-19 | 193 | 237 | IPR005540 | KNOX1 |
Pfam | PF03790 | 1.2E-17 | 196 | 236 | IPR005540 | KNOX1 |
SMART | SM01256 | 2.4E-29 | 246 | 301 | IPR005541 | KNOX2 |
Pfam | PF03791 | 3.7E-21 | 250 | 300 | IPR005541 | KNOX2 |
Pfam | PF03789 | 4.4E-6 | 358 | 379 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 9.917 | 358 | 378 | IPR005539 | ELK domain |
SMART | SM01188 | 0.0017 | 358 | 379 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.726 | 378 | 441 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.4E-11 | 380 | 445 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.85E-16 | 380 | 444 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 9.42E-12 | 381 | 442 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.2E-25 | 385 | 442 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.3E-17 | 398 | 437 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0009722 | Biological Process | detection of cytokinin stimulus | ||||
GO:0071345 | Biological Process | cellular response to cytokine stimulus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 455 aa Download sequence Send to blast |
MAFPNHFSQE MALQHFSDHH LGDNSSVLPT ILPQHLPHSS PDGKTPDAQL HAPPPPPTWL 60 NSAILRQQAQ YSGPTAPGAT GGDANFLNLH TNSDSSAAAS QASNQWLSRS ILQRNVSDVR 120 DDVQVSNDSM IAAAISHESA ADLNNNNNNN TNNNNDNTTS NRNNGGELTE NEVAGGGGPT 180 AAGGDGAMNW QNARHKAEIL SHPLYEQLLS AHVACLRIAT PVDQLPRIDA QLAQSQHVVA 240 KYSALTHVNL GDDKELDQFM THYVLLLCSF KEQLQQHVRV HAMEAVMACW EIEQSLQSLT 300 GVSPGEGTGA TMSDDDDDQV DSDANLFDGS LDDPDSMGFG PLIPTESERS LMERVRQELK 360 RELKQGYKEK IVDIREEILR KRRAGKLPGD TTSVLKAWWQ SHSKWPYPTE EDKARLVQET 420 GLQLKQINNW FINQRKRNWH SNPSSSTASK SKRKR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1x2n_A | 2e-12 | 381 | 445 | 8 | 72 | Homeobox protein PKNOX1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 434 | 454 | RKRNWHSNPSSSTASKSKRKR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022864747.1 | 0.0 | homeobox protein knotted-1-like 3 isoform X1 | ||||
Swissprot | P48000 | 0.0 | KNAT3_ARATH; Homeobox protein knotted-1-like 3 | ||||
TrEMBL | A0A2R6PJ05 | 0.0 | A0A2R6PJ05_ACTCH; Homeobox protein knotted-1-like | ||||
STRING | XP_010265705.1 | 0.0 | (Nelumbo nucifera) |
Publications ? help Back to Top | |||
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