PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | cra_locus_11823_iso_5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 371aa MW: 40598.2 Da PI: 7.8412 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 106.8 | 1.2e-33 | 26 | 80 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl cra_locus_11823_iso_5_len_1670_ver_3 26 KPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 80 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.347 | 23 | 83 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.5E-32 | 23 | 81 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.72E-16 | 25 | 81 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.2E-23 | 26 | 81 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.2E-7 | 28 | 78 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 2.8E-21 | 120 | 159 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0010088 | Biological Process | phloem development | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 371 aa Download sequence Send to blast |
MNTAHHERPS MCVQGDSGLV LTTDPKPRLR WTVELHERFV DAVTQLGGPD KATPKTIMRV 60 MGVKGLTLYH LKSHLQKFRL GKQPHKEFSD HPIKDASSLE LQRNTSASSS GMIGRSMNEM 120 QMEVQRRIHE QLEVQRHLQL RIEAQGKYMQ TILEKACQTL AGENLSSSSA AYNNINNKGL 180 IGDFNFPSLQ DLSIYGGGGG AADQQQQQLQ LHHEQQQSDH GFVECLAGGK KRPNPNPYGG 240 GGGGTSKSPL MMWSSADDLR LQELAGTAAA TSCLGGSSSS QDDHHHHHQI QIAPHLSLDH 300 RNNNNEHLDS VSSDINYDTK PNMLMAGSSD QHNINAGEKN AGTKLERPSP RRAGSERQMV 360 SAGAGRNSPF G |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 1e-18 | 26 | 82 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-18 | 26 | 82 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-18 | 26 | 82 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-18 | 26 | 82 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development. Regulates the expression of the transcription factor NAC045 (AC A4VCM0). May activate the transcription of specific genes involved in phosphate uptake or assimilation (PubMed:15592750). Promotes flowering through transcriptional activation of both FT and its transport machinery component, FTIP1 (PubMed:26239308). {ECO:0000269|PubMed:14614507, ECO:0000269|PubMed:18523061, ECO:0000269|PubMed:25081480, ECO:0000269|PubMed:26239308, ECO:0000305|PubMed:15592750}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Up-regulated by phosphate deficiency. {ECO:0000269|PubMed:15592750}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027063492.1 | 1e-140 | myb family transcription factor APL-like isoform X4 | ||||
Swissprot | Q9SAK5 | 1e-110 | APL_ARATH; Myb family transcription factor APL | ||||
TrEMBL | A0A2G9G9Z5 | 1e-133 | A0A2G9G9Z5_9LAMI; Uncharacterized protein | ||||
STRING | VIT_19s0085g00890.t01 | 1e-131 | (Vitis vinifera) | ||||
STRING | evm.model.supercontig_32.94 | 1e-131 | (Carica papaya) |
Publications ? help Back to Top | |||
---|---|---|---|
|