PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_11823_iso_4

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

G2-like

Protein Properties

Length: 374aa MW: 40940.6 Da PI: 7.8412

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_11823_iso_4	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.8	1.2e-33	26	80	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl cra_locus_11823_iso_4_len_1679_ver_3 26 KPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 80 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.6E-32	23	81	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.347	23	83	IPR017930	Myb domain
SuperFamily	SSF46689	1.74E-16	25	81	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.2E-23	26	81	IPR006447	Myb domain, plants
Pfam	PF00249	1.2E-7	28	78	IPR001005	SANT/Myb domain
Pfam	PF14379	2.8E-21	123	162	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010088	Biological Process	phloem development
GO:0010089	Biological Process	xylem development
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence Send to blast
MNTAHHERPS MCVQGDSGLV LTTDPKPRLR WTVELHERFV DAVTQLGGPD KATPKTIMRV 60 MGVKGLTLYH LKSHLQKFRL GKQPHKEFSD HPIKDGERAS SLELQRNTSA SSSGMIGRSM 120 NEMQMEVQRR IHEQLEVQRH LQLRIEAQGK YMQTILEKAC QTLAGENLSS SSAAYNNINN 180 KGLIGDFNFP SLQDLSIYGG GGGAADQQQQ QLQLHHEQQQ SDHGFVECLA GGKKRPNPNP 240 YGGGGGGTSK SPLMMWSSAD DLRLQELAGT AAATSCLGGS SSSQDDHHHH HQIQIAPHLS 300 LDHRNNNNEH LDSVSSDINY DTKPNMLMAG SSDQHNINAG EKNAGTKLER PSPRRAGSER 360 QMVSAGAGRN SPFG

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence Send to blast

MNTAHHERPS MCVQGDSGLV LTTDPKPRLR WTVELHERFV DAVTQLGGPD KATPKTIMRV  60
MGVKGLTLYH LKSHLQKFRL GKQPHKEFSD HPIKDGERAS SLELQRNTSA SSSGMIGRSM  120
NEMQMEVQRR IHEQLEVQRH LQLRIEAQGK YMQTILEKAC QTLAGENLSS SSAAYNNINN  180
KGLIGDFNFP SLQDLSIYGG GGGAADQQQQ QLQLHHEQQQ SDHGFVECLA GGKKRPNPNP  240
YGGGGGGTSK SPLMMWSSAD DLRLQELAGT AAATSCLGGS SSSQDDHHHH HQIQIAPHLS  300
LDHRNNNNEH LDSVSSDINY DTKPNMLMAG SSDQHNINAG EKNAGTKLER PSPRRAGSER  360
QMVSAGAGRN SPFG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-18	26	82	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-18	26	82	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-18	26	82	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-18	26	82	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development. Regulates the expression of the transcription factor NAC045 (AC A4VCM0). May activate the transcription of specific genes involved in phosphate uptake or assimilation (PubMed:15592750). Promotes flowering through transcriptional activation of both FT and its transport machinery component, FTIP1 (PubMed:26239308). {ECO:0000269\|PubMed:14614507, ECO:0000269\|PubMed:18523061, ECO:0000269\|PubMed:25081480, ECO:0000269\|PubMed:26239308, ECO:0000305\|PubMed:15592750}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by phosphate deficiency. {ECO:0000269\|PubMed:15592750}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027063491.1	1e-142	myb family transcription factor APL-like isoform X3
Swissprot	Q9SAK5	1e-114	APL_ARATH; Myb family transcription factor APL
TrEMBL	A0A1S3TY39	1e-134	A0A1S3TY39_VIGRR; myb family transcription factor APL isoform X3
STRING	evm.model.supercontig_32.94	1e-136	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7942	22	31

Publications ? help Back to Top
Martínez-Navarro AC,Galván-Gordillo SV,Xoconostle-Cázares B,Ruiz-Medrano R Vascular gene expression: a hypothesis. Front Plant Sci, 2013. 4: p. 261 [PMID:23882276] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kondo Y, et al. Vascular Cell Induction Culture System Using Arabidopsis Leaves (VISUAL) Reveals the Sequential Differentiation of Sieve Element-Like Cells. Plant Cell, 2016. 28(6): p. 1250-62 [PMID:27194709] Shibuta M,Abe M FE Controls the Transcription of Downstream Flowering Regulators Through Two Distinct Mechanisms in Leaf Phloem Companion Cells. Plant Cell Physiol., 2017. 58(11): p. 2017-2025 [PMID:29036620]