PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_11823_iso_3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | G2-like | ||||||||
Protein Properties | Length: 369aa MW: 40370.9 Da PI: 7.8412 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 106.8 | 1.2e-33 | 26 | 80 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl cra_locus_11823_iso_3_len_1664_ver_3 26 KPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 80 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.347 | 23 | 83 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.5E-32 | 23 | 81 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.7E-16 | 25 | 81 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.2E-23 | 26 | 81 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.2E-7 | 28 | 78 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.8E-16 | 120 | 157 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010088 | Biological Process | phloem development | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 369 aa Download sequence Send to blast |
MNTAHHERPS MCVQGDSGLV LTTDPKPRLR WTVELHERFV DAVTQLGGPD KATPKTIMRV 60 MGVKGLTLYH LKSHLQKFRL GKQPHKEFSD HPIKDASSLE LQRNTSASSS GMIGRSMNEM 120 QMEVQRRIHE QLERHLQLRI EAQGKYMQTI LEKACQTLAG ENLSSSSAAY NNINNKGLIG 180 DFNFPSLQDL SIYGGGGGAA DQQQQQLQLH HEQQQSDHGF VECLAGGKKR PNPNPYGGGG 240 GGTSKSPLMM WSSADDLRLQ ELAGTAAATS CLGGSSSSQD DHHHHHQIQI APHLSLDHRN 300 NNNEHLDSVS SDINYDTKPN MLMAGSSDQH NINAGEKNAG TKLERPSPRR AGSERQMVSA 360 GAGRNSPFG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 1e-18 | 26 | 82 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-18 | 26 | 82 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-18 | 26 | 82 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-18 | 26 | 82 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development. Regulates the expression of the transcription factor NAC045 (AC A4VCM0). May activate the transcription of specific genes involved in phosphate uptake or assimilation (PubMed:15592750). Promotes flowering through transcriptional activation of both FT and its transport machinery component, FTIP1 (PubMed:26239308). {ECO:0000269|PubMed:14614507, ECO:0000269|PubMed:18523061, ECO:0000269|PubMed:25081480, ECO:0000269|PubMed:26239308, ECO:0000305|PubMed:15592750}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by phosphate deficiency. {ECO:0000269|PubMed:15592750}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027063492.1 | 1e-136 | myb family transcription factor APL-like isoform X4 | ||||
Swissprot | Q9SAK5 | 1e-107 | APL_ARATH; Myb family transcription factor APL | ||||
TrEMBL | A0A2G9G9Z5 | 1e-130 | A0A2G9G9Z5_9LAMI; Uncharacterized protein | ||||
STRING | VIT_19s0085g00890.t01 | 1e-128 | (Vitis vinifera) | ||||
STRING | evm.model.supercontig_32.94 | 1e-128 | (Carica papaya) |
Publications ? help Back to Top | |||
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