PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_11823_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

G2-like

Protein Properties

Length: 336aa MW: 36526.4 Da PI: 6.9957

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_11823_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	74.9	1.1e-23	26	68	1	43
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtl 43 kprlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLt cra_locus_11823_iso_2_len_1564_ver_3 26 KPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTX 68 79***************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.0E-21	23	67	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.3E-9	25	68	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.7E-15	26	68	IPR006447	Myb domain, plants
Pfam	PF14379	2.4E-21	85	124	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010088	Biological Process	phloem development
GO:0010089	Biological Process	xylem development
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MNTAHHERPS MCVQGDSGLV LTTDPKPRLR WTVELHERFV DAVTQLGGPD KATPKTIMRV 60 MGVKGLTXLP SQEPSGMIGR SMNEMQMEVQ RRIHEQLEVQ RHLQLRIEAQ GKYMQTILEK 120 ACQTLAGENL SSSSAAYNNI NNKGLIGDFN FPSLQDLSIY GGGGGAADQQ QQQLQLHHEQ 180 QQSDHGFVEC LAGGKKRPNP NPYGGGGGGT SKSPLMMWSS ADDLRLQELA GTAAATSCLG 240 GSSSSQDDHH HHHQIQIAPH LSLDHRNNNN EHLDSVSSDI NYDTKPNMLM AGSSDQHNIN 300 AGEKNAGTKL ERPSPRRAGS ERQMVSAGAG RNSPFG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development. Regulates the expression of the transcription factor NAC045 (AC A4VCM0). May activate the transcription of specific genes involved in phosphate uptake or assimilation (PubMed:15592750). Promotes flowering through transcriptional activation of both FT and its transport machinery component, FTIP1 (PubMed:26239308). {ECO:0000269\|PubMed:14614507, ECO:0000269\|PubMed:18523061, ECO:0000269\|PubMed:25081480, ECO:0000269\|PubMed:26239308, ECO:0000305\|PubMed:15592750}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by phosphate deficiency. {ECO:0000269\|PubMed:15592750}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027063492.1	1e-104	myb family transcription factor APL-like isoform X4
Swissprot	Q9SAK5	2e-80	APL_ARATH; Myb family transcription factor APL
TrEMBL	A0A2G9G9Z5	2e-99	A0A2G9G9Z5_9LAMI; Uncharacterized protein
STRING	XP_004293816.1	1e-100	(Fragaria vesca)

Publications ? help Back to Top
Martínez-Navarro AC,Galván-Gordillo SV,Xoconostle-Cázares B,Ruiz-Medrano R Vascular gene expression: a hypothesis. Front Plant Sci, 2013. 4: p. 261 [PMID:23882276] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kondo Y, et al. Vascular Cell Induction Culture System Using Arabidopsis Leaves (VISUAL) Reveals the Sequential Differentiation of Sieve Element-Like Cells. Plant Cell, 2016. 28(6): p. 1250-62 [PMID:27194709] Shibuta M,Abe M FE Controls the Transcription of Downstream Flowering Regulators Through Two Distinct Mechanisms in Leaf Phloem Companion Cells. Plant Cell Physiol., 2017. 58(11): p. 2017-2025 [PMID:29036620]