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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | cra_locus_11812_iso_1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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| Family | bHLH | ||||||||
| Protein Properties | Length: 276aa MW: 31160.2 Da PI: 8.6984 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 42.9 | 8.5e-14 | 82 | 134 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
+r h +Er+RR+++ + ++ Lr+llP ++K s a+ ++Av+YIk+Lq
cra_locus_11812_iso_1_len_1395_ver_3 82 KRIIHRDIERQRRQEMANLYASLRSLLPLeY---IKGKRSIADHMQEAVNYIKYLQ 134
6888*************************77...*********************9 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| CDD | cd00083 | 5.33E-12 | 80 | 138 | No hit | No description |
| PROSITE profile | PS50888 | 14.602 | 81 | 133 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SuperFamily | SSF47459 | 3.27E-14 | 81 | 151 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:4.10.280.10 | 1.6E-10 | 82 | 152 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Pfam | PF00010 | 7.3E-11 | 82 | 134 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SMART | SM00353 | 2.0E-6 | 87 | 139 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 276 aa Download sequence Send to blast |
MFDPLQPSDD LDYYQIPYIH PPPPAPMFEQ ATISNNNNNN FNITTTGKRL RQPEKKSSPQ 60 FHEVVGNNII NDDGSCTDHK LKRIIHRDIE RQRRQEMANL YASLRSLLPL EYIKGKRSIA 120 DHMQEAVNYI KYLQKNIEEL GVRRDEIMKK ASSSNSKTNS NNNGSSASED GSGVSVSPNS 180 STVTVNLCRD GALEILISGS CNLKELTVNF PISKVLKKLV EEGFNVISCI STKSNEFVTV 240 HRILTAEVRD TKCINIMELQ QKLSNIINRR QSHADK |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 81 | 93 | KRIIHRDIERQRR |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_011076502.2 | 9e-56 | transcription factor bHLH120-like | ||||
| TrEMBL | A0A068UCB9 | 1e-50 | A0A068UCB9_COFCA; Uncharacterized protein | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA598 | 24 | 109 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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