PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_117_iso_8 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | Trihelix | ||||||||
Protein Properties | Length: 451aa MW: 51304.9 Da PI: 6.46 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 81.4 | 1.2e-25 | 137 | 218 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsess 76 W ++e++aLi++rre+++ ++++k++k+lW+++s kmr +gf rsp++C++kw+nl k++kkik++ ++ +s cra_locus_117_iso_8_len_1585_ver_3 137 WVQEETRALINLRREIDSLFNTTKSNKHLWDQISMKMRGKGFDRSPTMCTDKWRNLLKEFKKIKQNGDRN---AS 208 ****************************************************************999985...66 PP trihelix 77 stcpyfdqle 86 +++y++++e cra_locus_117_iso_8_len_1585_ver_3 209 AKMSYYKEIE 218 7899***997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 8.641 | 129 | 193 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-5 | 130 | 195 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.9E-6 | 133 | 195 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 1.58E-26 | 135 | 200 | No hit | No description |
Pfam | PF13837 | 7.0E-20 | 136 | 220 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 451 aa Download sequence Send to blast |
XGRGTEGLTQ IQEIPAPVEV PTSLRLFFTV WNFSKFSRNX EILTRKKAMY MSEKPQAIDF 60 YKEEEENPEE TRDMIIEVAA ATNENSAAIH LPAVHHHHHH QVVGCGETTS SGGEDNTPTN 120 PSSSSDMKVP KKRAETWVQE ETRALINLRR EIDSLFNTTK SNKHLWDQIS MKMRGKGFDR 180 SPTMCTDKWR NLLKEFKKIK QNGDRNASAK MSYYKEIEEI LKERGKNGGS YKSPPPTSTK 240 VDSFMQFSDK GIDDANIAFG AVEANGRQAL NLERRLDHDG HPLAITAAEA VAAGGVSPWN 300 WRDNPGNGEQ STSYEGRVIS IKWGDYTKRI GIDGTANGIK EAIKSAFRLR TKRAFWLEDE 360 DNVVRTLDRD MPLGNYTLHV DEGLTIKVCL YEESDHLPVH TEDKTFYTEE DFREFLSRRG 420 WTCLREYNGY RNIDNMEELC PGVIYRGVSM G |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2jmw_A | 5e-40 | 131 | 216 | 1 | 86 | DNA binding protein GT-1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00640 | PBM | Transfer from MDP0000164819 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027150731.1 | 0.0 | trihelix transcription factor GT-4 | ||||
Swissprot | Q9FX53 | 1e-175 | TGT1_ARATH; Trihelix transcription factor GT-1 | ||||
TrEMBL | A0A068UY15 | 0.0 | A0A068UY15_COFCA; Uncharacterized protein | ||||
STRING | XP_009784713.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5113 | 21 | 36 |
Publications ? help Back to Top | |||
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