PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_11766_iso_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | MYB | ||||||||
Protein Properties | Length: 217aa MW: 25441.4 Da PI: 10.1892 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 61.1 | 2.3e-19 | 20 | 67 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll+++vk++G g+W++++r g++R +k+c++rw +yl cra_locus_11766_iso_2_len_949_ver_3 20 KGPWTAEEDRLLIEYVKLHGEGRWNSVSRLAGLKRNGKSCRLRWVNYL 67 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.5 | 5.4e-17 | 73 | 117 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg T+ E+ ++v++++++G++ W+tIar ++ gRt++++k++w+++ cra_locus_11766_iso_2_len_949_ver_3 73 RGQITPHEESIIVELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 117 7888******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.638 | 15 | 71 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.48E-30 | 17 | 114 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.9E-17 | 19 | 69 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.7E-18 | 20 | 67 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-23 | 21 | 74 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.66E-11 | 22 | 67 | No hit | No description |
SMART | SM00717 | 1.5E-14 | 72 | 120 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.493 | 72 | 122 | IPR017930 | Myb domain |
Pfam | PF00249 | 6.8E-14 | 73 | 117 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-24 | 75 | 122 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.19E-9 | 77 | 118 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MAAASHEPLG WGMVEEGWRK GPWTAEEDRL LIEYVKLHGE GRWNSVSRLA GLKRNGKSCR 60 LRWVNYLRPD LKRGQITPHE ESIIVELHAR WGNRWSTIAR SLPGRTDNEI KNYWRTHFKK 120 KVKSPNDNNS EKVRARLLKR QQYHQQQQQH QQQQQMHQAQ DQILDMKRLM SFLEENEDHV 180 SSAAAAGGGG IIFSDTSNEH QNHHHQQQQQ SKDFFIP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-27 | 20 | 122 | 27 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006285781.2 | 4e-92 | transcription repressor MYB6 | ||||
TrEMBL | R0GP77 | 8e-91 | R0GP77_9BRAS; Uncharacterized protein | ||||
STRING | XP_006285781.1 | 1e-91 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |