PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_11745_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

bHLH

Protein Properties

Length: 367aa MW: 39556.1 Da PI: 6.8583

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_11745_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.9	0.0002	250	288	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L +l+ + +K + a++L +A+ YI+ Lq cra_locus_11745_iso_2_len_1569_ver_3 250 RKEKLGDRITALHQLVSPF-----GKTDTASVLSEAIGYIRFLQ 288 6778889999999999998.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.153	238	287	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.2E-8	246	296	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.44E-10	248	299	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.02E-6	248	292	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence Send to blast
MGGGNPKWWS INSMHPQQQS QQLSSSSSSS SSSSSSTSSS QYLYGSINST SMMPHHHDDQ 60 YQEFPRSWSQ LLLGGLGNHE QERFVNNPFH QQYNNNNNNN SKKLENWGEE EDGHQSPSLR 120 AAAVHVDVKQ EEAVAQINSN TSSLLLYGDS ADHHHEFHQL ASSNWLSPPQ VIIMPPAAAS 180 SPATSCVTSL STTGLLNFSG SAGPQYHQLL QQGSRSNQEN SISECNSSNN SVQKKPKIQH 240 SSTQTVLKVR KEKLGDRITA LHQLVSPFGK TDTASVLSEA IGYIRFLQAQ IEALSSPYMG 300 SSSSNVSAGG GGGGSMGGHQ QHHSECHSDR PKDLKSRGLC LVPVSCTQHV GSENGADYWA 360 PALGGGF

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence Send to blast

MGGGNPKWWS INSMHPQQQS QQLSSSSSSS SSSSSSTSSS QYLYGSINST SMMPHHHDDQ  60
YQEFPRSWSQ LLLGGLGNHE QERFVNNPFH QQYNNNNNNN SKKLENWGEE EDGHQSPSLR  120
AAAVHVDVKQ EEAVAQINSN TSSLLLYGDS ADHHHEFHQL ASSNWLSPPQ VIIMPPAAAS  180
SPATSCVTSL STTGLLNFSG SAGPQYHQLL QQGSRSNQEN SISECNSSNN SVQKKPKIQH  240
SSTQTVLKVR KEKLGDRITA LHQLVSPFGK TDTASVLSEA IGYIRFLQAQ IEALSSPYMG  300
SSSSNVSAGG GGGGSMGGHQ QHHSECHSDR PKDLKSRGLC LVPVSCTQHV GSENGADYWA  360
PALGGGF

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027126564.1	1e-101	transcription factor bHLH68-like isoform X1
TrEMBL	A0A068TNU7	1e-99	A0A068TNU7_COFCA; Uncharacterized protein
STRING	POPTR_0001s18660.1	2e-83	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1519	22	47