PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_11745_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

bHLH

Protein Properties

Length: 365aa MW: 39385 Da PI: 6.8583

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_11745_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.9	0.0002	249	287	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L +l+ + +K + a++L +A+ YI+ Lq cra_locus_11745_iso_1_len_1563_ver_3 249 RKEKLGDRITALHQLVSPF-----GKTDTASVLSEAIGYIRFLQ 287 6778889999999999998.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.153	237	286	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.2E-8	245	295	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.44E-10	247	298	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.99E-6	247	291	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence Send to blast
MGGGNPKWWS INSMHPQQQS QQLSSSSSSS SSSSSSTSSS QYLYGSINST SMMPHHHDDQ 60 YQEFPRSWSQ LLLGGLGNHE QERFVNNPFH QQYNNNNNNS KKLENWGEEE DGHQSPSLRA 120 AAVHVDVKQE EAVAQINSNT SSLLLYGDSA DHHHEFHQLA SSNWLSPPQV IIMPPAAASS 180 PATSCVTSLS TTGLLNFSGS AGPQYHQLLQ QGSRSNQENS ISECNSSNNS VQKKPKIQHS 240 STQTVLKVRK EKLGDRITAL HQLVSPFGKT DTASVLSEAI GYIRFLQAQI EALSSPYMGS 300 SSSNVSAGGG GGSMGGHQQH HSECHSDRPK DLKSRGLCLV PVSCTQHVGS ENGADYWAPA 360 LGGGF

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence Send to blast

MGGGNPKWWS INSMHPQQQS QQLSSSSSSS SSSSSSTSSS QYLYGSINST SMMPHHHDDQ  60
YQEFPRSWSQ LLLGGLGNHE QERFVNNPFH QQYNNNNNNS KKLENWGEEE DGHQSPSLRA  120
AAVHVDVKQE EAVAQINSNT SSLLLYGDSA DHHHEFHQLA SSNWLSPPQV IIMPPAAASS  180
PATSCVTSLS TTGLLNFSGS AGPQYHQLLQ QGSRSNQENS ISECNSSNNS VQKKPKIQHS  240
STQTVLKVRK EKLGDRITAL HQLVSPFGKT DTASVLSEAI GYIRFLQAQI EALSSPYMGS  300
SSSNVSAGGG GGSMGGHQQH HSECHSDRPK DLKSRGLCLV PVSCTQHVGS ENGADYWAPA  360
LGGGF

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027126564.1	1e-101	transcription factor bHLH68-like isoform X1
TrEMBL	A0A068TNU7	1e-100	A0A068TNU7_COFCA; Uncharacterized protein
STRING	POPTR_0001s18660.1	6e-84	(Populus trichocarpa)