PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_11711_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | bHLH | ||||||||
Protein Properties | Length: 199aa MW: 21371.5 Da PI: 7.5105 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 20.5 | 8.9e-07 | 161 | 187 | 4 | 30 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 4 ahnerErrRRdriNsafeeLrellPka 30 +h+ +Er RR++i +++ L++l+P + cra_locus_11711_iso_1_len_1363_ver_3 161 SHSLAERARREKISERMKILQDLVPGC 187 8************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 6.53E-5 | 155 | 189 | No hit | No description |
SuperFamily | SSF47459 | 5.37E-8 | 155 | 189 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.0E-8 | 157 | 189 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.604 | 157 | 199 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.6E-4 | 161 | 187 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MDPPIINEAS FSAANPSSYS LAELWPFPIS GAGTGNGDLG GLGLRMGSFG GFRGDATTVS 60 VDESTVTEQS ASHGASAGRK RKDFNSEDES SKPVSTSSAN DLNNSCAKRM KESRAKEENG 120 DSKVEGETSS ETGKKANEQG KPEPPKDYIH VRARRGQATD SHSLAERARR EKISERMKIL 180 QDLVPGCNKV LYAFFPISR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016563548.1 | 2e-81 | PREDICTED: transcription factor bHLH79 | ||||
Swissprot | Q9LV17 | 7e-53 | BH079_ARATH; Transcription factor bHLH79 | ||||
TrEMBL | A0A1U8G4D0 | 5e-80 | A0A1U8G4D0_CAPAN; transcription factor bHLH79 | ||||
TrEMBL | A0A2G3AW72 | 5e-80 | A0A2G3AW72_CAPCH; Transcription factor bHLH79 | ||||
STRING | XP_006476705.1 | 3e-79 | (Citrus sinensis) |
Publications ? help Back to Top | |||
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