PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_11625_iso_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family GRAS
Protein Properties Length: 546aa    MW: 62059 Da    PI: 7.314
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_11625_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS276.11.1e-841284982374
                                  GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvsely.kalppsetsekn 73 
                                           v  Ll+ Ae + ++++e+a++lL++  +++s +g++++R++ yf  AL++r+ r++ ++  k l  +++   +
  cra_locus_11625_iso_1_len_1635_ver_3 128 VMYLLASAEKIVDNQFERARKLLNECDKMSSAKGKAIERVVYYFSGALHERIDRKTGTVTpKGLGNKQSL--D 198
                                           567999************************************************4444440333333332..3 PP

                                  GRAS  74 sseelaalkl....fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLa.sRpegpps 141
                                             ++l+ lk      ++  P+ ++ +++a qa+l+ v  ++++HiiD++i  G+++  ++qaLa +R  +   
  cra_locus_11625_iso_1_len_1635_ver_3 199 ILDSLMDLKPdiiaMQKYVPFSQVWQFAAVQAVLDHVGDARKIHIIDMEIRTGMHYTIMMQALAaQRCVPLEY 271
                                           444444443344579*************************************************66779999* PP

                                  GRAS 142 lRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrll 214
                                           l++T+vg     s+ ++eetg++L +fAe+l++++ f++++++++ d++ + L+vk++Ea+a+   l    l+
  cra_locus_11625_iso_1_len_1635_ver_3 272 LKVTAVGT---RSRGKIEETGRQLISFAESLNLKLYFDIVMVDDILDFHERLLEVKTDEAVAIYAELTFLFLV 341
                                           ********...5899*************************************************999777665 PP

                                  GRAS 215 desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEr 287
                                               s +++ + +++++k+++P+v+v+ve ea+hns+ Fl+rfle+l ++ a+fd+le  l +++  r++ E 
  cra_locus_11625_iso_1_len_1635_ver_3 342 ----SRQDRLELLMNVIKRINPRVMVMVEVEANHNSPVFLNRFLETLLHFGAFFDCLEDCLKHDEASRMFTEG 410
                                           ....66666777************************************************************* PP

                                  GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv 359
                                           +++++ i+ +va+eg+er+ rh t++ W++ + ++G+ +v+ls + + qakl+l++++ +   +ve + +sl+
  cra_locus_11625_iso_1_len_1635_ver_3 411 VYFSQGIRTIVAAEGEERTIRHVTMNVWKMFFARFGMVQVELSMSSVYQAKLMLNNFAcGSSCTVETDGKSLI 483
                                           **********************************************************9999*********** PP

                                  GRAS 360 lgWkdrpLvsvSaWr 374
                                            gWk+ p+ s+SaW+
  cra_locus_11625_iso_1_len_1635_ver_3 484 VGWKGTPIHSLSAWK 498
                                           **************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098539.676101477IPR005202Transcription factor GRAS
PfamPF035143.8E-82128498IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
XCSNDSFFDI ASNSPSPSFG EVFTENSQLI ESRKEGSYTE SLKILKNYQN RFRRLSAAPK  60
RKFPAYDCVC TNVVFKKLSV AEIIKLAAEK IIQGSSQHSA DESSVVSHPY ASSFLGYSEE  120
DYNDVELVMY LLASAEKIVD NQFERARKLL NECDKMSSAK GKAIERVVYY FSGALHERID  180
RKTGTVTPKG LGNKQSLDIL DSLMDLKPDI IAMQKYVPFS QVWQFAAVQA VLDHVGDARK  240
IHIIDMEIRT GMHYTIMMQA LAAQRCVPLE YLKVTAVGTR SRGKIEETGR QLISFAESLN  300
LKLYFDIVMV DDILDFHERL LEVKTDEAVA IYAELTFLFL VSRQDRLELL MNVIKRINPR  360
VMVMVEVEAN HNSPVFLNRF LETLLHFGAF FDCLEDCLKH DEASRMFTEG VYFSQGIRTI  420
VAAEGEERTI RHVTMNVWKM FFARFGMVQV ELSMSSVYQA KLMLNNFACG SSCTVETDGK  480
SLIVGWKGTP IHSLSAWKVK XDNNKTCKKL VMAVKDSLSL DFLVVYEVVH FREAKIYKVT  540
VKQICX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-3113550027381Protein SCARECROW
5b3h_A6e-3113550026380Protein SCARECROW
5b3h_D6e-3113550026380Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027164748.10.0DELLA protein RGL2-like
TrEMBLA0A068TR450.0A0A068TR45_COFCA; Uncharacterized protein
STRINGXP_009800222.11e-174(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34272149