PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_11598_iso_4

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

G2-like

Protein Properties

Length: 414aa MW: 46043.5 Da PI: 7.3045

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_11598_iso_4	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.5	1.5e-33	45	99	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LHerF+eav+qLGG++kAtPk++l+lm+++gLtl+h+kSHLQkYRl cra_locus_11598_iso_4_len_1652_ver_3 45 KPRLKWTPDLHERFIEAVNQLGGADKATPKSVLKLMGIQGLTLYHLKSHLQKYRL 99 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.38	42	102	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.2E-31	43	100	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.96E-17	44	100	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.1E-24	45	100	IPR006447	Myb domain, plants
Pfam	PF00249	2.5E-10	47	98	IPR001005	SANT/Myb domain
Pfam	PF14379	1.2E-15	144	190	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 414 aa Download sequence Send to blast
MYPHHHQGKN IHASSRMSIP PERHLFLQGG NGPGDSGLVL STDAKPRLKW TPDLHERFIE 60 AVNQLGGADK ATPKSVLKLM GIQGLTLYHL KSHLQKYRLS KNLHGQANSG GNKSPAAAEE 120 RISEGSGTQT SNSSIAPQTN KNLHIGEAIQ MQIEVQRRLH EQLRCNGTYS CXIEAQGKYL 180 QAVLEKAQET LGRQNLGSMG LEAAKVQISE LVSKVSTQCL NSAFSDVKEL SGLCPQQTQT 240 PQPTDCSMDS CLTSCEGPLR DQDMHNNKMA IGTLNFKTVM ESKNISNEPS LRQTEQRWCE 300 DLNDKRRFLL SMNEEAEKEC AMEKSCSNLS MSIGLQGGWN TNIYSEKGIT ETNRDTKFFD 360 QPCSRHDAVP TVKQRSSQEY KMPFFAPKLD LNTDDETDAA SKCKQFDLNG FSWS

Sequence ? help Back to Top

Protein Sequence Length: 414 aa Download sequence Send to blast

MYPHHHQGKN IHASSRMSIP PERHLFLQGG NGPGDSGLVL STDAKPRLKW TPDLHERFIE  60
AVNQLGGADK ATPKSVLKLM GIQGLTLYHL KSHLQKYRLS KNLHGQANSG GNKSPAAAEE  120
RISEGSGTQT SNSSIAPQTN KNLHIGEAIQ MQIEVQRRLH EQLRCNGTYS CXIEAQGKYL  180
QAVLEKAQET LGRQNLGSMG LEAAKVQISE LVSKVSTQCL NSAFSDVKEL SGLCPQQTQT  240
PQPTDCSMDS CLTSCEGPLR DQDMHNNKMA IGTLNFKTVM ESKNISNEPS LRQTEQRWCE  300
DLNDKRRFLL SMNEEAEKEC AMEKSCSNLS MSIGLQGGWN TNIYSEKGIT ETNRDTKFFD  360
QPCSRHDAVP TVKQRSSQEY KMPFFAPKLD LNTDDETDAA SKCKQFDLNG FSWS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-22	44	101	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-22	44	101	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-22	45	101	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-22	45	101	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-22	45	101	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-22	45	101	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-22	44	101	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-22	44	101	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-22	44	101	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-22	44	101	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-22	44	101	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-22	44	101	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:15592750}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269\|PubMed:15592750}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027065684.1	0.0	myb-related protein 2-like isoform X1
Refseq	XP_027069547.1	0.0	myb-related protein 2-like isoform X1
Refseq	XP_027156141.1	0.0	myb-related protein 2-like isoform X1
Refseq	XP_027173590.1	0.0	myb-related protein 2-like isoform X1
Swissprot	Q9SQQ9	1e-136	PHL9_ARATH; Myb-related protein 2
TrEMBL	A0A068V4H4	0.0	A0A068V4H4_COFCA; Uncharacterized protein
STRING	XP_002525443.1	0.0	(Ricinus communis)

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis. Plant Sci., 2017. 263: p. 219-225 [PMID:28818378]