PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_11598_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

G2-like

Protein Properties

Length: 429aa MW: 47957.1 Da PI: 7.8669

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_11598_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	54.6	2.3e-17	2	34	23	55
G2-like 23 GsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 G++kAtPk++l+lm+++gLtl+h+kSHLQkYRl cra_locus_11598_iso_2_len_1587_ver_3 2 GADKATPKSVLKLMGIQGLTLYHLKSHLQKYRL 34 99******************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.94E-6	2	35	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.3E-11	2	35	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	3.7E-15	2	35	IPR009057	Homeodomain-like
Pfam	PF14379	7.7E-9	79	103	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain
Pfam	PF14379	9.7E-11	180	205	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 429 aa Download sequence Send to blast
XGADKATPKS VLKLMGIQGL TLYHLKSHLQ KYRLSKNLHG QANSGGNKSP AAAEERISEG 60 SGTQTSNSSI APQTNKNLHI GEAIQMQIEV QRRLHEQLEX IARLIKTKYP IHKHYIIQGQ 120 NASKHNSDAT HANCKSFLSF XEAIVENPIG KKLFFILCLS VTNSIIFFAT SEISSXMIXV 180 QRHLQLRIEA QGKYLQAVLE KAQETLGRQN LGSMGLEAAK VQISELVSKV STQCLNSAFS 240 DVKELSGLCP QQTQTPQPTD CSMDSCLTSC EGPLRDQDMH NNKMAIGTLN FKTVMESKNI 300 SNEPSLRQTE QRWCEDLNDK RRFLLSMNEE AEKECAMEKS CSNLSMSIGL QGGWNTNIYS 360 EKGITETNRD TKFFDQPCSR HDAVPTVKQR SSQEYKMPFF APKLDLNTDD ETDAASKCKQ 420 FDLNGFSWS

Sequence ? help Back to Top

Protein Sequence Length: 429 aa Download sequence Send to blast

XGADKATPKS VLKLMGIQGL TLYHLKSHLQ KYRLSKNLHG QANSGGNKSP AAAEERISEG  60
SGTQTSNSSI APQTNKNLHI GEAIQMQIEV QRRLHEQLEX IARLIKTKYP IHKHYIIQGQ  120
NASKHNSDAT HANCKSFLSF XEAIVENPIG KKLFFILCLS VTNSIIFFAT SEISSXMIXV  180
QRHLQLRIEA QGKYLQAVLE KAQETLGRQN LGSMGLEAAK VQISELVSKV STQCLNSAFS  240
DVKELSGLCP QQTQTPQPTD CSMDSCLTSC EGPLRDQDMH NNKMAIGTLN FKTVMESKNI  300
SNEPSLRQTE QRWCEDLNDK RRFLLSMNEE AEKECAMEKS CSNLSMSIGL QGGWNTNIYS  360
EKGITETNRD TKFFDQPCSR HDAVPTVKQR SSQEYKMPFF APKLDLNTDD ETDAASKCKQ  420
FDLNGFSWS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:15592750}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269\|PubMed:15592750}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019153103.1	1e-109	PREDICTED: myb-related protein 2-like isoform X1
Refseq	XP_019153122.1	1e-110	PREDICTED: myb-related protein 2-like isoform X3
Refseq	XP_019153130.1	1e-110	PREDICTED: myb-related protein 2-like isoform X3
Swissprot	Q9SQQ9	1e-54	PHL9_ARATH; Myb-related protein 2
STRING	XP_009619712.1	9e-98	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2946	24	51

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis. Plant Sci., 2017. 263: p. 219-225 [PMID:28818378]