PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_11573_iso_3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | MYB_related | ||||||||
Protein Properties | Length: 231aa MW: 25891.6 Da PI: 9.2478 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.8 | 3.8e-16 | 31 | 74 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T +E++l+++++k+lG++ W++Ia +++ gRt++++k++w++ cra_locus_11573_iso_3_len_787_ver_3 31 RGNITNDEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNT 74 7999******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 4.333 | 1 | 25 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-11 | 11 | 37 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.2E-19 | 11 | 80 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 23.871 | 26 | 80 | IPR017930 | Myb domain |
SMART | SM00717 | 5.5E-15 | 30 | 78 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-14 | 31 | 74 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.12E-11 | 35 | 76 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.1E-20 | 38 | 75 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006633 | Biological Process | fatty acid biosynthetic process | ||||
GO:0006970 | Biological Process | response to osmotic stress | ||||
GO:0010023 | Biological Process | proanthocyanidin biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MVAMVEAAGL KRCGKSCRLR WLNYLRPDIK RGNITNDEED LIIRLHKLLG NRWSLIAGRL 60 PGRTDNEIKN YWNTNIGKRL LEGHHHHPSS STTGSKPSSS IKSSRAKKNL SKKGSSCVVR 120 TKATRCTKVF IDAELEQTQK PGIMATKEDG IIEKTGLETE AVAMAMAAAK VSKDNSSNFL 180 MDIEMDDKFL YEFFRGEFIT SCDLKTRQDS ELGSVASLLD PSDLNWLLQD Q |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-20 | 12 | 80 | 40 | 108 | B-MYB |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH2/EGL3/MYC146, BHLH12/MYC1, or BHLH42/TT8. Involved in the control of flavonoid late metabolism in developing siliques. Plays a key role in determining the tissue-specific activation of leucoanthocyanidin reductase (BANYULS). {ECO:0000269|PubMed:15361138}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027125293.1 | 3e-66 | transcription factor MYB4-like isoform X3 | ||||
Refseq | XP_027125294.1 | 3e-66 | transcription factor MYB4-like isoform X3 | ||||
Refseq | XP_027168307.1 | 6e-66 | transcription factor MYB4-like | ||||
Swissprot | Q9FJA2 | 4e-46 | TT2_ARATH; Transcription factor TT2 | ||||
TrEMBL | A0A2U9IY27 | 1e-162 | A0A2U9IY27_CATRO; MYB domain containing protein transparent testa 2b | ||||
STRING | EOY27233 | 2e-63 | (Theobroma cacao) |