PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_11573_iso_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | MYB | ||||||||
Protein Properties | Length: 267aa MW: 30058.4 Da PI: 9.7353 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.4 | 5.1e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT +Ed++l +++k +G g W+ +++ g++R++k+c++rw++yl cra_locus_11573_iso_2_len_898_ver_3 14 KGAWTSQEDKILTEYIKVHGEGKWRNLPKKAGLKRCGKSCRLRWLNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.5 | 4.7e-16 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T +E++l+++++k+lG++ W++Ia +++ gRt++++k++w++ cra_locus_11573_iso_2_len_898_ver_3 67 RGNITNDEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNT 110 7999******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.5E-23 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.53 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.54E-28 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.5E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.7E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.69E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 23.871 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-23 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.5E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-14 | 67 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.06E-10 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006633 | Biological Process | fatty acid biosynthetic process | ||||
GO:0006970 | Biological Process | response to osmotic stress | ||||
GO:0010023 | Biological Process | proanthocyanidin biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 267 aa Download sequence Send to blast |
MGRSPCCVKE GLNKGAWTSQ EDKILTEYIK VHGEGKWRNL PKKAGLKRCG KSCRLRWLNY 60 LRPDIKRGNI TNDEEDLIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT NIGKRLLEGH 120 HHHPSSSTTG SKPSSSIKSS RAKKNLSKKG SSCVVRTKAT RCTKVFIDAE LEQTQKPGIM 180 ATKEDGIIEK TGLETEAVAM AMAAAKVSKD NSSNFLMDIE MDDKFLYEFF RGEFITSCDL 240 KTRQDSELGS VASLLDPSDL NWLLQDQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-26 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH2/EGL3/MYC146, BHLH12/MYC1, or BHLH42/TT8. Involved in the control of flavonoid late metabolism in developing siliques. Plays a key role in determining the tissue-specific activation of leucoanthocyanidin reductase (BANYULS). {ECO:0000269|PubMed:15361138}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021293767.1 | 1e-95 | transcription factor TT2-like | ||||
Refseq | XP_027125292.1 | 3e-95 | transcription factor MYB4-like isoform X2 | ||||
Refseq | XP_027125293.1 | 1e-95 | transcription factor MYB4-like isoform X3 | ||||
Refseq | XP_027125294.1 | 1e-95 | transcription factor MYB4-like isoform X3 | ||||
Refseq | XP_027168307.1 | 3e-95 | transcription factor MYB4-like | ||||
Swissprot | Q9FJA2 | 6e-64 | TT2_ARATH; Transcription factor TT2 | ||||
TrEMBL | A0A2U9IY27 | 0.0 | A0A2U9IY27_CATRO; MYB domain containing protein transparent testa 2b | ||||
STRING | EOY27233 | 7e-94 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |