PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_1156_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | MYB | ||||||||
Protein Properties | Length: 397aa MW: 44502.8 Da PI: 9.6797 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.3 | 1.2e-15 | 4 | 53 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 r+rW +eEd ll +vkq+G + W++I+ +mg + R +k+c +rw +yl cra_locus_1156_iso_1_len_1663_ver_3 4 RQRWQPEEDALLRAYVKQYGAKEWNLISTRMGktLDRDPKSCLERWKNYL 53 89**********************************************97 PP | |||||||
2 | Myb_DNA-binding | 35.8 | 1.9e-11 | 59 | 103 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+ T+eE+ l + + +++G++ Wk+Ia++++ gRt+k + +w + cra_locus_1156_iso_1_len_1663_ver_3 59 KGSLTPEEQNLVISLQAKYGNK-WKKIAAEVP-GRTAKRLGKWWEVF 103 6788******************.*********.*****999999766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 23.253 | 1 | 57 | IPR017930 | Myb domain |
SMART | SM00717 | 2.6E-13 | 3 | 55 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.62E-22 | 4 | 98 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.74E-9 | 6 | 53 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.0E-21 | 6 | 60 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 5.5E-15 | 7 | 68 | No hit | No description |
PROSITE profile | PS51294 | 18.507 | 58 | 108 | IPR017930 | Myb domain |
SMART | SM00717 | 4.1E-10 | 58 | 106 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.8E-16 | 61 | 108 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.01E-7 | 63 | 104 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 397 aa Download sequence Send to blast |
MKERQRWQPE EDALLRAYVK QYGAKEWNLI STRMGKTLDR DPKSCLERWK NYLKPGIKKG 60 SLTPEEQNLV ISLQAKYGNK WKKIAAEVPG RTAKRLGKWW EVFKEKQLKQ LQKSQNRQEY 120 SSDPAAVSAV SGGGSPDKAA QGKYDHILET FAEKYVQPKL FGFHHQSSSL PLPPTIMPNI 180 SIPDPPPVVL SLGSVAIPEP VAISAGLPAW MNTTPTTTSS LTSSSSTTPS PSVSLSLSPS 240 EPAVLDPDLG LGGGRYFPVQ QMSSLVQYCK EVEEGRQNWV QHKKEAAWRL SRLEQQLESE 300 KARKRREKME EIEGKIRCLR EEEMGFLCKI ESEYRDQLSA LQRDAEAKEG KLMEAWCSKH 360 VKLAKLVEQI GGVLHHGSSS SSHGGFITTS LPKDHLR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-14 | 7 | 92 | 10 | 92 | B-MYB |
3zqc_A | 5e-14 | 11 | 100 | 9 | 95 | MYB3 |
3zqc_D | 5e-14 | 11 | 100 | 9 | 95 | MYB3 |
3zqc_G | 5e-14 | 11 | 100 | 9 | 95 | MYB3 |
3zqc_J | 5e-14 | 11 | 100 | 9 | 95 | MYB3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 302 | 307 | RKRREK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for normal cell differentiation. Positively regulates LATERAL ORGAN BOUNDARIES (LOB) within the shoot apex, and the class III HD-ZIP genes REV, PHB, and PHV. Interacts directly with ASYMMETRIC LEAVES 2 (LBD6/AS2) to repress the knox homeobox genes BP/KNAT1, KNAT2, and KNAT6 and the abaxial determinants ARF3/ETT, KAN2 and YAB5. May act in parallel with the RDR6-SGS3-AGO7 pathway, an endogenous RNA silencing pathway, to regulate the leaf morphogenesis (PubMed:11076771, PubMed:11140682, PubMed:11882937, PubMed:12750468, PubMed:16006579, PubMed:16699177, PubMed:17395603, PubMed:17559509, PubMed:23271976). Binds directly to KNAT1, KNAT2, and KNATM chromatin, regulating leaf development (PubMed:23271976). LBD6 is required for this binding (PubMed:23271976). Positive regulator of flowering that binds to the promoter of FT (PubMed:21950734). Regulates FT expression by forming a functional complex with CO (PubMed:21950734). Involved in leaf polarity establishment by functioning cooperatively with NUCL1 to repress abaxial genes ARF3, ARF4, KAN1, KAN2, YAB1 and YAB5, and the knox homeobox genes KNAT1, KNAT2, KNAT6, and STM to promote adaxial development in leaf primordia at shoot apical meristems at high temperatures (PubMed:27334696). {ECO:0000269|PubMed:11076771, ECO:0000269|PubMed:11140682, ECO:0000269|PubMed:11882937, ECO:0000269|PubMed:12750468, ECO:0000269|PubMed:16006579, ECO:0000269|PubMed:16699177, ECO:0000269|PubMed:17395603, ECO:0000269|PubMed:17559509, ECO:0000269|PubMed:23271976, ECO:0000269|PubMed:27334696}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation with an afternoon peak in long days and with a broad night peak in short days (PubMed:21950734). Expression of AS1 in stem cells of the shoot apical meristem is prevented by SHOOT MERISTEMLESS (STM). Expression is activated by GTE6 during leaf morphogenesis (PubMed:16166385). {ECO:0000269|PubMed:16166385, ECO:0000269|PubMed:21950734}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027075224.1 | 0.0 | protein rough sheath 2 homolog | ||||
Swissprot | O80931 | 1e-104 | AS1_ARATH; Transcription factor AS1 | ||||
TrEMBL | A0A068U2N0 | 0.0 | A0A068U2N0_COFCA; Uncharacterized protein | ||||
STRING | XP_009630091.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2933 | 24 | 45 |