PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_11535_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ERF
Protein Properties Length: 292aa    MW: 32516.7 Da    PI: 4.7733
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_11535_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.81.3e-1869117355
                                   AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                           y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a+++ ++k++g
  cra_locus_11535_iso_1_len_1272_ver_3  69 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFSTAEEAARAYDREARKIRG 117
                                           9*******.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.4E-3268126IPR001471AP2/ERF domain
SMARTSM003802.9E-3868131IPR001471AP2/ERF domain
PROSITE profilePS5103223.80268125IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-2268126IPR016177DNA-binding domain
CDDcd000181.86E-3169126No hitNo description
PRINTSPR003678.3E-126980IPR001471AP2/ERF domain
PfamPF008471.7E-1169117IPR001471AP2/ERF domain
PRINTSPR003678.3E-1291107IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MCGGAILSGL IPRSGNRGVS SSDLWPTAAA DFWPKTSADN APILKRSQPS ETGGEQVRKS  60
AKRQRKNLYR GIRQRPWGKW AAEIRDPRKG VRVWLGTFST AEEAARAYDR EARKIRGKKA  120
KVNFPNEEME FESTYHPPQQ FYPNFNANSS GVPYNTSNGC FYANLNQLEA AAGNGAYNYS  180
TVGFQTPSDE LSGSASDNEG IYSRLPVKEE EEEEEQAANP RENKPIEATE REDEVEKLKE  240
ELMAYENYMK FYQIPYLDGQ STTAAAASNP AQETAIGVGP IELWSFDEES GQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-2169125663ATERF1
3gcc_A3e-2169125663ATERF1
5wx9_A3e-21691271574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024167967.14e-85ethylene-responsive transcription factor ERF071
TrEMBLA0A059VQH50.0A0A059VQH5_CATRO; Ethylene-responsive transcription
STRINGXP_008454315.11e-83(Cucumis melo)