PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_11487_iso_4
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family HSF
Protein Properties Length: 535aa    MW: 58569.3 Da    PI: 4.4997
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_11487_iso_4genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind116.91.2e-36431342102
                                           HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT CS
                          HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks 74 
                                           Fl k+y++++d+++++++sws+++nsfvv+d+ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++     
  cra_locus_11487_iso_4_len_1971_ver_3  43 FLVKTYDMVDDPSTDKIVSWSSTNNSFVVWDPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR----- 110
                                           9****************************************************************999..... PP

                                           XTTSEEEEESXXXXXXXXXXXXXXXXXX CS
                          HSF_DNA-bind  75 kekiweFkhksFkkgkkellekikrkks 102
                                               weF+++ F +g+k+ll++i r+k 
  cra_locus_11487_iso_4_len_1971_ver_3 111 ----WEFANEGFLRGQKHLLKSISRRKP 134
                                           ....*********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.2E-4035127IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.2E-6439132IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.63E-3639132IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.5E-204366IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.0E-3243132IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.5E-208193IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434082106IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.5E-2094106IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    Send to blast
MAASSNGRGK ALAADGGGEG NAGSPPPTPA PAPMPNTNAP PPFLVKTYDM VDDPSTDKIV  60
SWSSTNNSFV VWDPPEFARD LLPKYFKHNN FSSFVRQLNT YGFRKVDPDR WEFANEGFLR  120
GQKHLLKSIS RRKPAHGHSQ QQQQPHGQSS SVGACVEVGK FGLEEEVERL KRDKNVLMQE  180
LVRLRQQQQT TDNQLQTMVQ RLQGMEQRQQ QMMSFLAKAV NSPGFLAQFV QQQNDSTRRI  240
TEGSKKRRLK QDGLSDGLSV DPADGQIVKY QPGMNEAAKA VMRQLMKLDS SPRLDNFSNN  300
ADSYLISNDT SSKSIESGSS SNRVSGVTLQ EVPPTPVQTF IPPTSGMTGQ GSTAAMSEIQ  360
SAPIGTASEI VSSQLSDMNG LVGTQDLPPV TLSPPDMIIP ELSQLPEISQ ENNVDIMSTE  420
TENGAFVDPT VLAINGKLPL GISDLPSDPQ IDWDSSLLDD MEDLPGSIDP FWEKFLESPS  480
QSMETEDIDS TTVEDLSKGN EVKAVDNGWN KSEHMEQLTE QMGLLTSDGK KVDLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-274113227129Heat shock factor protein 1
5d5v_B4e-274113227129Heat shock factor protein 1
5d5v_D4e-274113227129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1244249KKRRLK
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027180723.10.0heat shock factor protein HSF8-like
SwissprotQ401520.0HSF8_SOLLC; Heat shock factor protein HSF8
TrEMBLA0A314L0P40.0A0A314L0P4_NICAT; Heat shock factor protein hsf8
STRINGPGSC0003DMT4000460000.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA64131931
Publications ? help Back to Top
  1. Zhu B, et al.
    Identification and characterization of a novel heat shock transcription factor gene, GmHsfA1, in soybeans (Glycine max).
    J. Plant Res., 2006. 119(3): p. 247-56
    [PMID:16570125]
  2. Cai SY, et al.
    HsfA1a upregulates melatonin biosynthesis to confer cadmium tolerance in tomato plants.
    J. Pineal Res., 2017.
    [PMID:28095626]
  3. Zhou J, et al.
    Heat Shock Factor HsfA1a Is Essential for R Gene-Mediated Nematode Resistance and Triggers H2O2 Production1.
    Plant Physiol., 2018. 176(3): p. 2456-2471
    [PMID:29339397]